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2022-02-02Revert "Deprecate Python 2 installations" (#28411)Adam J. Stewart109-397/+400
This reverts commit 7b76e3982f94ee952fe5d8fb0d19b389cc28228a.
2022-02-02Add a "sticky" property to variants (#28630)Massimiliano Culpo10-101/+196
* Add sticky variants * Add unit tests for sticky variants * Add documentation for sticky variants * Revert "Revert 19736 because conflicts are avoided by clingo by default (#26721)" This reverts commit 33ef7d57c1a09d6ce454503e9ff5638747e4f4a2. * Add stickiness to "allow-unsupported-compiler"
2022-02-02build(deps): bump docker/build-push-action from 2.8.0 to 2.9.0 (#28719)dependabot[bot]1-1/+1
Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 2.8.0 to 2.9.0. - [Release notes](https://github.com/docker/build-push-action/releases) - [Commits](https://github.com/docker/build-push-action/compare/1814d3dfb36d6f84174e61f4a4b05bd84089a4b9...7f9d37fa544684fb73bfe4835ed7214c255ce02b) --- updated-dependencies: - dependency-name: docker/build-push-action dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2022-02-02gromacs: Add versions 2021.4 and 2021.5 (#28722)Carlos Bederián1-0/+2
2022-02-02Snakemake: add v6.15.1 (#28724)Marcus Boden1-0/+1
2022-02-01new packages: py-rst2pdf and py-smartypants (#28697)Glenn Johnson2-0/+50
* new packages: py-rst2pdf and py-smartypants The py-smartypants package is a dependency of py-rst2pdf. * add missing dependencies
2022-02-01expat: Add latest release 2.4.4 with security fixes (#28692)Sebastian Pipping1-2/+3
2022-02-01py-argparse: skip dep for newer Python (#28718)Adam J. Stewart26-30/+26
2022-02-01Jali package: add version 1.1.6 (#28545)Rao Garimella1-2/+3
Boost dependency is only needed for @:1.1.5
2022-02-01TermStatusLine: fix python 2.7 and add test (#28715)Harmen Stoppels2-1/+12
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-02-01CI: macOS try to build latest GCC (#28709)Massimiliano Culpo1-1/+1
2022-02-01py-rich: fix installation with poetry (#28710)Nils Leif Fischer1-1/+1
2022-02-01Sarus: Add 1.4.1, use commits instead of tarballs, tests (#28705)Teodor Nikolov1-39/+28
- To retrieve the correct spack version we need to get it from the git repo. - Recommend installing the package with root for production - Add Tomas as maintainer to sarus' spack package - Add the option to disable unit tests in latest versions
2022-02-01lua: add fetcher for luarocks (#28707)Harmen Stoppels1-0/+6
2022-02-01SLEPc: add v3.16.2 (#28706)Jose E. Roman2-2/+4
2022-02-01rocm-openmp-extras: add v4.3.1 and v4.5.0 (#27653)estewart081-17/+45
2022-02-01ParaView/VTK: Update hdf5 constraints (#28691)kwryankrattiger2-0/+2
hdf5@1.10: is required for the new version of vtkHDFReader
2022-02-01Ascent/Conduit: Update the +fortran build config (#28646)kwryankrattiger2-20/+3
Do not silently turn off fortran support based on checking if a fortran compiler exists. Let the build fail if there is no working fortran compiler.
2022-02-01py-torchgeo: specify libtiff variants (#28681)Adam J. Stewart1-0/+1
2022-02-01conduit: add new variant and hcfg entry (#27822)Cyrus Harrison1-0/+6
2022-02-01dray: add new variant and host config entry (#28598)Cyrus Harrison1-12/+27
2022-02-01p7zip: fix build on gcc 11 (#28376)Torbjörn Lönnemark2-0/+28
Fixes the following build failure when building with gcc 11: 478 ../../../../CPP/7zip/Archive/Wim/WimHandler.cpp: In member function 'virtual LONG NArchive::NWim::CHandler::GetArchiveProperty(PROPID, PROPVARIANT*)': >> 479 ../../../../CPP/7zip/Archive/Wim/WimHandler.cpp:308:11: error: use of an operand of type 'bool' in 'operator++' is forbidden in C++17 480 308 | numMethods++; 481 | ^~~~~~~~~~ >> 482 ../../../../CPP/7zip/Archive/Wim/WimHandler.cpp:318:9: error: use of an operand of type 'bool' in 'operator++' is forbidden in C++17 483 318 | numMethods++; 484 | ^~~~~~~~~~
2022-02-01gettext: find external (#28610)Nils Leif Fischer1-0/+11
2022-02-01Add version v0.6 to Arbor package. (#28628)Brent Huisman1-3/+7
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2022-02-01Eccodes: update urls and add new versions (#28614)Sergey Kosukhin1-2/+5
2022-02-01gcc: allow building 11.2.0 on macOS (#28662)Massimiliano Culpo1-0/+5
2022-02-01ascent: add patch for gcc 10 + 11 (#28592)Cyrus Harrison2-0/+28
2022-02-01Update package versions: RADICAL-Cybertools (RE, RP, RS, RU) (#28523)Mikhail Titov4-6/+14
* rct: update packages (RE, RP, RS, RU) with new versions * rct: minor version release for RP * rct: fixed versions for dependencies (RS and RU)
2022-02-01saga-gis: tweak dependencies and deprecate some versions (#28677)Glenn Johnson1-9/+16
- deprecate versions 2 and 3 - set needed opencv variants - adjust proj constraint - patch header path for opencv
2022-02-01libdc1394: update dependencies and add libraw1394 dependency (#28675)Glenn Johnson2-0/+21
2022-02-01py-black: add v22.1.0 (#28680)Adam J. Stewart2-21/+26
2022-02-01 jsonnet: add new package (#28645)Pat Riehecky1-0/+39
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-02-01pika: add v0.1.0 (#28684)Mikael Simberg1-0/+1
Co-authored-by: Mikael Simberg <mikael.simberg@iki.if>
2022-02-01alpaka: add v0.8.0 (#28689)Valentin Volkl2-1/+2
2022-02-01vtk-m: add v1.7.1 release (#28690)Vicente Bolea1-1/+2
2022-02-01charmpp: default backend to 'multicore' on macOS (#28443)Nils Leif Fischer1-1/+7
2022-02-01llvm: add llvm_config helper (#28670)Tom Scogland1-0/+9
Add a helper as a base to build better libs etc. methods
2022-02-01xyce: add 'plugin' variant (#28698)Paul Kuberry1-1/+7
2022-02-01maven: add v3.8.4 (#28699)Ryan Marcellino1-0/+1
2022-02-01samrai: add "--enable-shared" option as "+shared" (#28695)Dylan Jude1-0/+5
2022-02-01py-torch: fix python_platlib reference (#28565)Adam J. Stewart1-2/+8
2022-02-01pygmo: fix build (#28702)Adam J. Stewart1-9/+15
2022-01-31opencv: add new version, variant, and patch (#27374)Glenn Johnson24-695/+1134
* opencv: add new version, variant, and patch - added version 4.5.4 - added tesseract variant - added patch to not add system paths * Add leptonica depends and contrib conflicts * Add dependencies for 1394 support - new package: libraw1394 - add sdl dependency to libdc1394 - add conflict for openjpeg and jasper * Adjust dependencies and conflicts for opencv modules * rewrite of opencv - all prebuilt apps are now variants and can be installed - core is no longer a variant. It was always built anyway so it was not really a variant. - contrib is no longer a variant. All of the contrib modules are now available as variants. - components that can not be built with Spack are no longer variants. They are set to 'off' to prevent pulling from system. - handle the case where a module and a component have the same name - use `with when` framework - adjust dependencies and conflicts - new package: libraw1394 - have libdc1394 depend on libraw1394 - patch to find clp - patch to find onnx - patch for cvv to find Qt - format with black * Incorporate recommended changes - fix variants and dependencies on packages that depend on opencv - remove opencv-3.2 and patches - add some new patches to handle different versions - cntk needs further work - the openvslam package was markde deprecated as it is no longer an active project and the repository has no code * Remove gmake dependency. * Remove sdl support SDL is only used in an example case, but the examples are not built. * remove openvslam * Remove opencv+flann variant from 3dtk * Back out cfitsio constraint from py-astropy * remove opencv+flann variant from dlib * remove boost constraint from 3dtk * Remove non-opencv related bohrium changes * Adjustments for cntk - protobuf constraint at version 3.10 - need specific variants for opencv - improve patch * Deprecate CNTK package * variant tweaks - added appropriate conflicts for cublas - made cuda/cudev relationship explicit - moved openx to pending components as it needs an openvx package * fix isort style error * Use date version from kaldi rather than commit * Revert changes from a bad rebase * Add +flann to 3dtk and dlib * Use compression support with libtiff * remove `+datasets` from opencv dependency The py-torchgeo package does not need opencv+datasets. * fix typo zip --> zlib
2022-01-31e4s ci: add spec: gptune (#28604)eugeneswalker2-0/+2
2022-01-31mesa18: depends on python@3.8.99 max (#28345)eugeneswalker1-1/+1
2022-01-31Update Packages: py-asgiref, py-h11, py-websockets (#28649)Pat Riehecky3-2/+13
2022-01-31Add checksum for py-cryptography 3.2.1 (#28685)iarspider1-0/+1
2022-01-31changing site_packages_dir to python_platlib for gptune (#28669)liuyangzhuan2-4/+5
* added package gptune with all its dependencies: adding py-autotune, pygmo, py-pyaml, py-autotune, py-gpy, py-lhsmdu, py-hpbandster, pagmo2, py-opentuner; modifying superlu-dist, py-scikit-optimize * adding gptune package * minor fix for macos spack test * update patch for py-scikit-optimize; update test files for gptune * fixing gptune package style error * fixing unit tests * a few changes reviewed in the PR * improved gptune package.py with a few newly added/improved dependencies * fixed a few style errors * minor fix on package name py-pyro4 * fixing more style errors * Update var/spack/repos/builtin/packages/py-scikit-optimize/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * resolved a few issues in the PR * fixing file permissions * a few minor changes * style correction * minor correction to jq package file * Update var/spack/repos/builtin/packages/py-pyro4/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * fixing a few issues in the PR * adding py-selectors34 required by py-pyro4 * improved the superlu-dist package * improved the superlu-dist package * moree changes to gptune and py-selectors34 based on the PR * Update var/spack/repos/builtin/packages/py-selectors34/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * improved gptune package: 1. addressing comments of tldahlgren in PR 26936; 2. adding variant openmpi * fixing style issue of gptune * changing file mode * improved gptune package: add variant mpispawn which depends on openmpi; add variant superlu and hypre for installing the drivers; modified hypre package file to add a gptune variant * fixing style error * corrected pddrive_spawn path in gptune test; enforcing gcc>7 * fixing style error * setting environment variables when loading gptune * removing debug print in hypre/package.py * adding superlu-dist v7.2.0; fixing an issue with CMAKE_INSTALL_LIBDIR * changing site_packages_dir to python_platlib * not using python3.9 for py-gpy, which causes due to dropped support of tp_print * more replacement of site_packages_dir Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-01-31Fix SECURITY.md file by adding v0.17.x to supported versions (#28661)Massimiliano Culpo1-0/+1
2022-01-31julia: add targets constraint to llvm (#28682)Harmen Stoppels1-1/+1
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