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2021-11-17llvm: introduce [build/link]_llvm_dylib (#27450)Harmen Stoppels3-7/+16
Apart from building a single dylib for LLVM, users should also be able to link tools against it.
2021-11-17Add Htslib v1.14, Samtools v1.14, and Bcftools v1.14 (#27515)Alec Scott3-0/+7
2021-11-17openPMD-validator: 1.1.0.2 (#27514)Axel Huebl1-1/+5
Add the latest versions.
2021-11-17Add LMOD v8.5.27 (#27513)Alec Scott1-0/+1
2021-11-17Updated Repository Information (#27496)Ben Bergen1-2/+2
2021-11-17New patch release SLEPc 3.16.1 (#27509)Jose E. Roman2-2/+4
2021-11-17py-ipykernel: add 5.5.6 (#27498)Manuela Kuhn1-0/+1
2021-11-17llvm: use LIBCXX_ENABLE_STATIC_ABI_LIBRARY=ON (#27448)Harmen Stoppels1-16/+6
The previous workaround of using CMAKE_INSTALL_RPATH=ON was used to avoid CMake trying to write an RPATH into the linker script libcxx.so, which is nonsensical. See commit f86ed1e. However, CMAKE_INSTALL_RPATH=ON seems to disable the build RPATH, which breaks LLVM during the build when it has to locate its build-time shared libraries (e.g. libLLVM.so). That required yet another workaround, where some shared libraries were installed "by hand", so that they were picked up from the install libdir. See commit 8a81229. This was a dirty workaround, and also makes it impossible to use ninja, since we explicitly invoked make. This commit removes the two old workaround, and sets LIBCXX_ENABLE_STATIC_ABI_LIBRARY=ON, so that libc++abi.a is linked into libc++.so, which makes it enough to link with -lc++ or invoke clang++ with -stdlib=libc++, so that our install succeeds and linking LLVM's c++ standard lib is still easy.
2021-11-17openblas: add a symbol suffix variant (#27500)Harmen Stoppels1-0/+18
Some packages use a 64_ or _64 symbol suffix for the ilp64 (= 64-bit integers) intefrace for BLAS. In particular if we want to support shim libraries like libopenblastrampoline supporting both the 32 and 64 bit integer version of blas, it must be possible to distinguish between the two.
2021-11-17qt+webkit: Build needs Py2, but mesa/Meson needs Py3 (#27466)Bernhard Kaindl1-2/+17
mesa inherits MesonPackage (since October 2020) which depends on Py@3. The conflicts('mesa') enables a regular build of `qt@5.7:5.15+webkit` without having to specify the exact version by causing the concretizer to select mesa18 which does not depend on python@3. Co-authored-by: Bernhard Kaindl <bernhard.kaindl@ait.ac.at>
2021-11-17New version of Spack and new conflicts (#27384)Harmen Stoppels1-5/+10
2021-11-17Fix overly generic exceptions in log parser (#27413)Harmen Stoppels1-4/+0
This type of error is skipped: make[1]: *** [Makefile:222: /tmp/user/spack-stage/.../spack-src/usr/lib/julia/libopenblas64_.so.so] Error 1 but it's useful to have it, especially when a package sets a variable incorrectly in makefiles
2021-11-17Add ReFrame 3.9.1 (#27493)Vasileios Karakasis1-0/+1
2021-11-16New version: py-pytest-cov 3.0.0; add 'toml' variant to py-coverage (#27478)iarspider2-0/+7
* New version: py-pytest-cov 3.0.0; add 'toml' variant to py-coverage * Update package.py
2021-11-16New version: py-pylint 2.8.2; new package py-platformdirs (#27473)iarspider2-1/+30
* New version: py-pylint 2.8.2; new package py-platformdirs * Update var/spack/repos/builtin/packages/py-platformdirs/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-pylint/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-11-16llvm: maintainers (#27482)Harmen Stoppels1-1/+1
2021-11-16cdo: new release cdo-2.0.0 (#27457)Brian Spilner1-0/+1
2021-11-16Intel mpi: allow use of external libfabric (#27292)Robert Cohn3-19/+23
Intel mpi comes with an installation of libfabric (which it needs as a dependency). It can use other implementations of libfabric at runtime though, so if you install a package that depends on `mpi` and `libfabric`, you can specify `intel-mpi+external-libfabric` and ensure that the Spack-built instance is used (both by `intel-mpi` and the root). Apply analogous change to intel-oneapi-mpi.
2021-11-16New versions: py-pyasn1 0.4.8, py-pyasn1-modules 0.2.8 (#27453)iarspider2-1/+3
* New versions: py-pyasn1 0.4.8, py-pyasn1-modules 0.2.8 * Update package.py
2021-11-16Add py-h5py 3.6.0 (#27476)Thomas Kluyver1-0/+1
2021-11-16New version: py-pyrsistent 0.18.0 (#27477)iarspider1-1/+4
* New version: py-pyrsistent 0.18.0 * Update package.py * Update var/spack/repos/builtin/packages/py-pyrsistent/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-11-16py-pyqt-builder: add new package (#27484)Manuela Kuhn1-0/+20
2021-11-16New version: py-pytest 6.2.5 (#27481)iarspider1-4/+6
* New version: py-pytest 6.2.5 * Update var/spack/repos/builtin/packages/py-pytest/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-11-16Bump curl (#27471)Harmen Stoppels1-0/+2
2021-11-16New version: py-pu 1.11.0 (#27452)iarspider1-1/+4
2021-11-16New version: py-pycuda 2021.1 (#27458)iarspider1-2/+3
2021-11-16New version: py-pycurl 7.44.1 (#27470)iarspider1-0/+3
2021-11-16New version: py-pymongo 3.12.1 (#27474)iarspider1-0/+1
2021-11-16llvm: flang implies mlir (#27449)Harmen Stoppels1-0/+2
2021-11-16Add Python 3.9.9 (#27475)Harmen Stoppels1-0/+1
2021-11-16Add a symbol suffix option to LLVM (#27445)Harmen Stoppels1-0/+6
2021-11-16racket: fix URL extrapolation (#27459)Arjun Guha1-1/+4
2021-11-16mesa: Use the llvm-config of spec['llvm'] for '+llvm' (#27235)Bernhard Kaindl1-0/+10
Fix builds on hosts where /usr/bin/llvm-config-* is found and provides an incompatible version: Ensure that the llvm-config of spec['llvm'] is used.
2021-11-16Add a maintainer for Intel packages (#27465)Robert Cohn5-0/+10
2021-11-16lanl-cmake-modules: new package (#27447)Ben Bergen1-0/+17
Several projects have not yet added modern CMake support. This package adds find_package support for some of these projects.
2021-11-15oommf: new package (#26933)Hans Fangohr1-0/+295
Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
2021-11-15pgplot: Correct build error with shared libraries (#27154)Erik Schnetter2-13/+31
When building pgplot as shared library, dependencies need to be listed explicitly.
2021-11-15lcio: add v2.17 (#27238)Thomas Madlener1-0/+1
2021-11-15mpibind: add python bindings (#27127)Edgar Leon1-24/+35
2021-11-15Add module variables for NCEPLIBS (#27162)Kyle Gerheiser12-0/+98
Use setup_run_environment to search for libraries and set env variables for module generation. Libraries are installed with CMAKE_INSTALL_LIBDIR, which can be lib or lib64 depending on the machine, which makes it impossible to hardcode through modules.yaml.
2021-11-15mbedtls: fix shared libs needed section and add new version (#27285)Harmen Stoppels2-1/+81
2021-11-15libspatialite: add v5.0.1 (#27181)Sinan1-1/+3
Co-authored-by: sbulut <sbulut@3vgeomatics.com>
2021-11-15ECP-DAV-SDK: remove catalyst (#27204)kwryankrattiger1-5/+1
Temporarily remove +catalyst, assumes catalyst is on when +paraview
2021-11-15libfuse: fix build with new glibc (#27376)Michael Kuhn1-0/+17
glibc 2.34+ breaks libfuse@2 (see https://bugs.gentoo.org/803923). While we are at it, backport a few patches from upstream.
2021-11-15gchp: add v13.2.1 (#27318)laestrada1-2/+3
Co-authored-by: laestrada <lestrada00@gmail.com>
2021-11-15llvm: remove cyclades code from llvm-10:11 (#27385)Glenn Johnson2-0/+85
2021-11-15star-ccm-plus: add version and environment setup (#27388)Glenn Johnson1-1/+20
- add version 16.06.008_01 - set up run environment
2021-11-15perl-forks: handle non-threaded perl (#27392)Glenn Johnson1-0/+4
If the perl that perl-forks is built against is non-threaded the build system will drop into interactive mode to ask about simulating ithreads. This causes the build to hang. Set FORKS_SIMULATE_USEITHREADS to avoid going into interactive mode.
2021-11-15perl-dbd-mysql: depend on mysql-client (#27393)Glenn Johnson1-2/+2
2021-11-15ncl: add dependencies (#27394)Glenn Johnson1-2/+4
- zstd - makedepend
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