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2022-07-26containerize: fix concretization -> concretizer (#31594)Harmen Stoppels3-8/+8
* containerize: fix concretization -> concretizer * fix test
2022-07-26cmake: missing patch releases (#31676)Harmen Stoppels1-0/+2
2022-07-26llvm: Variant and dependency cleanup (#31331)Chuck Atkins9-268/+304
* llvm: Use variant when clauses for many of the expressed conflicts * llvm: Remove the shared variant as it wasn't really used * llvm: Remove unnecessary deps and make explicit the ones that are * llvm: Cleanup patch conditions * pocl: Update for llvm cleanup * unit-test: update unparse package hash with the updated llvm package * llvm: Fix ppc long double patching and add clarifying comments
2022-07-26Fix `self.extension` for symlinks (#31743)Stephen Sachs1-1/+3
`self.archive_file` is (among others) a symlink to a tarball. `extension()` on a symlink will result in no extension. This patch fixes the behavior introduced in https://github.com/spack/spack/pull/31618. Co-authored-by: Stephen Sachs <stesachs@amazon.com>
2022-07-25openblas %oneapi: patch f_check for proper linkage (#31737)eugeneswalker2-0/+34
2022-07-25new package: singularity-eos (#31500)Richard Berger1-0/+181
2022-07-25gdal: fixing typo for libxml2 (#31734)snehring1-1/+1
2022-07-25GCC: Add bootstrap conflict for M1 (#31189)psakievich1-0/+1
2022-07-25LLVM requires swig version > 3 (#31625)Paul Ferrell1-1/+4
2022-07-25llvm: Add missing include for version range 8 to 11 (#31639)haralmha1-0/+5
2022-07-25Fix stage with uri params (#31618)Harmen Stoppels2-3/+3
* don't determine extension of a url * parse url to drop query params from filename
2022-07-25wget: replacing prior workaround with proper fix (#31699)snehring2-9/+42
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2022-07-25py-torchdata: add new package (#31704)Adam J. Stewart3-4/+74
* py-torchdata: add new package * third_party deps only in 0.4+
2022-07-25py-torchmetrics: add v0.9.3 (#31707)Adam J. Stewart1-0/+1
2022-07-25py-geopandas: add v0.11.1 (#31710)Adam J. Stewart1-0/+1
2022-07-25py-sphinx: add v5.1.0 (#31711)Adam J. Stewart1-1/+3
2022-07-24Sphinx 5.1.0 breaks doc builds (#31709)Adam J. Stewart1-1/+1
2022-07-24[py-pyprecice] add v2.4.0.0 (#31697)Ishaan Desai1-3/+5
* Add py-pyprecice v2.4.0.0 * Adding lower bound to pip dependency * Removing when=@:2.1 from dependencies packaging and pip
2022-07-24py-vermin: add latest version 1.4.1 (#31708)Morten Kristensen1-1/+2
2022-07-22clingo patch fixed in patch release (#31690)Harmen Stoppels1-1/+1
2022-07-22llvm: fix patch already applied on main branch (#31694)Harmen Stoppels1-1/+1
2022-07-22coreutils: gnulib patch (#31693)Harmen Stoppels2-0/+42
Co-authored-by: snehring <snehring@iastate.edu>
2022-07-22Mark external as explicit only when installing explicitly (#31665)Harmen Stoppels2-5/+18
2022-07-22gromacs: Added version 2021.6 (#31692)Hector Martinez-Seara1-0/+1
2022-07-22autotools: add -I flag when non-standard libtool (#31677)Harmen Stoppels2-6/+99
When 1. Spack installs libtool, 2. system libtool is installed too, and 3. system automake is used Spack passes system automake's `-I <prefix>` flag to itself, even though it's a default search path. This takes precedence over spack's libtool prefix dir. This causes the wrong `libtool.m4` file to be used (since system libtool is in the same prefix as system automake). And that leads to error messages about incompatible libtool, something something LT_INIT.
2022-07-22Use pkg_cls in spack.mirror.get_all_versions (#31636)Massimiliano Culpo2-7/+22
fixes #31627 spack.mirror.get_all_versions now uses the package class instead of the package object in its implementation. Ensure spec is concrete before staging for mirrors
2022-07-22mpitrampoline: New version 4.2.0 (#31683)Erik Schnetter1-0/+1
2022-07-21py-torch: use immutable URLs for open-ce patches (#31672)Nicholas Sly1-9/+13
* Update open-ce patches for py-torch to us immutable URLs. Update magma dependency specs to be more explicit. * Address comments for PR regarding URLs and conflicting variants. Co-authored-by: Nicholas Cameron Sly <sly1@llnl.gov>
2022-07-21[py-numpy] Newer versions do not build with `icc` (#31637)Stephen Sachs1-0/+3
* [py-numpy] Newer versions do not build with `icc` Workaround until https://github.com/numpy/numpy/issues/22011 is solved. * [py-numpy] Remove whitespaces
2022-07-21Add version 3.2 of AMD libraries (#31538)AMD Toolchain Support6-20/+82
2022-07-21py-torch: ~caffe2 by default (#31656)Adam J. Stewart1-1/+1
2022-07-21py-torchvision: fix __version__ for stable releases (#31657)Adam J. Stewart1-2/+6
2022-07-21py-gpytorch: add v1.8.0 (#31649)Adam J. Stewart1-0/+1
2022-07-21py-nbmake: add v1.3.3 (#31651)Adam J. Stewart1-0/+2
2022-07-21flecsi: correct version 2.x depends_on (#31658)Richard Berger1-0/+1
Propagate +shared to legion
2022-07-21root does not actually install libraries in /lib but in /lib/root (#31624)Hadrien G1-5/+5
2022-07-21ncdu: add v1.16 and v1.17 (#31659)Johannes Blaschke1-0/+2
2022-07-21darshan: add v3.4.0 to runtime/util packages (#31666)shanedsnyder2-2/+4
2022-07-21giflib: restrict patch to darwin (#31670)snehring1-1/+1
2022-07-20Don't restage develop specs when a patch fails (#31593)psakievich2-3/+55
* make develop specs not restage when a patch fails * add a unit test
2022-07-20py-wheel: 0.37.1 (#31619)Harmen Stoppels1-0/+1
2022-07-20xgboost: Add version 1.6.1 and make openmp variant compatible with clang ↵haralmha2-1/+25
(#31557)
2022-07-20spack stage: add missing --fresh and --reuse (#31626)Harmen Stoppels3-1/+13
2022-07-20installer.py: require "explicit: True" in the install arguments to mark a ↵Harmen Stoppels2-1/+14
package "explicit" (#31646)
2022-07-18py-pip: 22.x (#31621)Harmen Stoppels1-0/+2
2022-07-18Update py-xdot to use python_purelib #31616 (#31628)Servesh Muralidharan1-1/+1
Issue discussed in https://github.com/spack/spack/issues/31616
2022-07-18rocblas: tighten tensile dependencies (#31414)Cory Bloor1-15/+10
* rocblas: make tensile dependencies conditional * Remove rocm-smi from the rocblas dependency list rocm-smi was added to the rocblas dependency list because Tensile was a dependency of rocBLAS and rocm-smi was a dependency of Tensile. However, that reasoning was not correct. Tensile is composed of three components: 1. A command-line tool for generating kernels, benchmarking them, and saving the parameters used for generating the best kernels (a.k.a. "Solutions") in YAML files. 2. A build system component that reads YAML solution files, generates kernel source files, and invokes the compiler to compile then into code object files (*.co, *.hsco). An index of the kernels and their associated parameters is also generated and stored in either YAML or MessagePack format (TensileLibrary.yaml or TensileLibrary.dat). 3. A runtime library that will load the TensileLibrary and code object files when asked to execute a GEMM and choose the ideal kernel for your specific input parameters. rocBLAS developers use (1) during rocBLAS development. This is when Tensile depends on rocm-smi. The GPU clock speed and temperature must be controlled to ensure consistency when doing the solution benchmarking. That control is provided by rocm-smi. When building rocBLAS, Tensile is used for (2). However, there is no need for control of the GPU at that point and rocm-smi is not a dependency. At runtime, the rocBLAS library uses Tensile for (3), but there is again no dependency on rocm-smi. tl;dr: rocm-smi is a dependency of the tensile benchmarking tool, which is not a build dependency or runtime dependency of rocblas.
2022-07-18e4s ci: add ginkgo +rocm (#31603)eugeneswalker1-0/+1
2022-07-18kraken2: add v2.1.2 (#31613)Luke Diorio-Toth1-0/+1
2022-07-18containerize: fix missing environment activation (#31596)Massimiliano Culpo1-2/+1