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2021-10-26modules: allow user to remove arch dir (#24156)Greg Becker8-11/+58
* allow no arch-dir modules * add tests for modules with no arch * document arch-specific module roots
2021-10-26hpctoolkit: add version 2021.10.15 (#26881)Mark W. Krentel1-0/+1
2021-10-26Py-Libensemble: Add E4S testsuite stand alone test (#26270)Richarda Butler1-0/+26
2021-10-26fix the spack test dir (#26816)Miroslav Stoyanov1-1/+1
2021-10-26ROCm packages: add RelWithDebInfo build_type (#26888)Sreenivasa Murthy Kolam41-24/+57
Also set default build_type to Release for many ROCm packages.
2021-10-26modules: configurable module defaults (#24367)Greg Becker4-3/+86
Any spec satisfying a default will be symlinked to `default` If multiple specs have modulefiles in the same directory and satisfy configured module defaults, then whichever was written last will be default.
2021-10-26upp: Add version 10.0.10 (#26946)Kyle Gerheiser1-0/+2
2021-10-26htop: add new URL and versions (#26928)Seth R. Johnson1-6/+12
2021-10-26virtest: prevent out-of-order build/test (#26944)Ben Morgan1-0/+5
Use of `-R` flag to CTest command causes "empty-14" test to run, by matching "empty", before the empty-14 target is built. Patch CTest command in buildscript to match name exactly.
2021-10-26hiop: update constraints and add new version (#26905)Asher Mancinelli1-50/+51
* Update hiop package dependencies * Use single quotes to shrink diff * add hiop 0.5.1 * apply flake8 * Apply formatting suggestions
2021-10-26Add checksum for py-argon2-cffi 21.1.0 and update python dependency (#26894)iarspider1-1/+4
* Add checksum for py-argon2-cffi 21.1.0 and update python dependency * Update package.py
2021-10-26New versions: py-bleach 4.0.0 and 4.1.0 (#26947)iarspider1-0/+3
2021-10-26New version: py-beniget 0.4.1 (#26945)iarspider1-0/+1
2021-10-26geant4: depends_on vecgeom@1.1.8:1.1 range (#26917)Wouter Deconinck2-1/+2
* [geant4] depends_on vecgeom@1.1.8:1.1 range While previous versions were unclear, the [geant4.10.7 release notes](https://geant4-data.web.cern.ch/ReleaseNotes/ReleaseNotes4.10.7.html) indicate that vecgeom@1.1.8 is a minimum required version, not an exact required version ("Set VecGeom-1.1.8 as minimum required version for optional build with VecGeom."). This will allow some more freedom on the concretizer solutions while allowing geant4 to take advantage of bugfixes and improvements in vecgeom. * [vecgeom] new version 1.1.17
2021-10-26freetype: explicitly specify dependencies (#26942)Seth R. Johnson1-2/+8
Freetype picked up 'brotli' from homebrew, causing issues downstream.
2021-10-26tau: add version 2.30.2 (#26941)eugeneswalker1-0/+1
2021-10-26unifyfs: Remove the hdf5 variant (examples only) (#26932)Chuck Atkins2-12/+1
UnifyFS doesn't actually use HDF5 for anything. Enabling it only enables a few examples to be built so it's not actually a dependency of the package.
2021-10-25qt package: versions @:5.13 don't build with gcc@11: (#26922)Seth R. Johnson1-0/+1
2021-10-25charmpp: add version 7.0.0 (#26940)Ronak Buch1-0/+1
2021-10-25py-kornia: add version 0.6.1 (#26939)Adam J. Stewart1-0/+3
2021-10-25py-shapely: add version 1.8.0 (#26937)Adam J. Stewart1-2/+4
2021-10-25py-scikit-learn: add version 1.0.1 (#26934)Adam J. Stewart1-0/+1
2021-10-25PyTorch/torchvision: add version 1.10.0/0.11.1 (#26889)Adam J. Stewart2-21/+16
* For py-torch: Also update dependencies: many version constraints with an upper bound of @1.9 are now open (e.g. `@1.8.0:1.9` is converted to `@1.8.0:`). * For py-torchvision: Also add 0.11.0 and update ^pil constraint to avoid building with 8.3.0
2021-10-25Add new versions of py-autopep8 and py-pycodestyle (#26924)iarspider2-15/+35
* Add new versions of py-autopep8 (1.5.7, 1.6.0) and py-pycodestyle (2.7.0, 2.8.0) * Update package.py * Restore old versions
2021-10-25deal.II package: Update CMake variable for >=9.3.0 (#26909)Daniel Arndt1-3/+8
2021-10-25containerize: pin the Spack version used in a container (#21910)Massimiliano Culpo22-90/+628
This PR permits to specify the `url` and `ref` of the Spack instance used in a container recipe simply by expanding the YAML schema as outlined in #20442: ```yaml container: images: os: amazonlinux:2 spack: ref: develop resolve_sha: true ``` The `resolve_sha` option, if true, verifies the `ref` by cloning the Spack repository in a temporary directory and transforming any tag or branch name to a commit sha. When this new ability is leveraged an additional "bootstrap" stage is added, which builds an image with Spack setup and ready to install software. The Spack repository to be used can be customized with the `url` keyword under `spack`. Modifications: - [x] Permit to pin the version of Spack, either by branch or tag or sha - [x] Added a few new OSes (centos:8, amazonlinux:2, ubuntu:20.04, alpine:3, cuda:11.2.1) - [x] Permit to print the bootstrap image as a standalone - [x] Add documentation on the new part of the schema - [x] Add unit tests for different use cases
2021-10-25py-avro: new version 1.10.2 (#26927)iarspider1-0/+2
* Add checksum for py-avro@1.10.2 * Update package.py
2021-10-25cuda: add 11.4.1, 11.4.2, 11.5.0. (#26892)Olli Lupton3-4/+21
* cuda: add 11.4.1, 11.4.2, 11.5.0. Note that the curses dependency from cuda-gdb was dropped in 11.4.0. * Update clang/gcc constraints. * Address review, assume clang 12 is OK from 11.4.1 onwards. * superlu-dist@7.1.0 conflicts with cuda@11.5.0. * Update var/spack/repos/builtin/packages/superlu-dist/package.py Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com> Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2021-10-25Add checksum for py-atomicwrites@1.4.0 (#26923)iarspider1-0/+1
2021-10-25draco: new version 7_12_0 (#26907)Kendra Long!1-0/+1
* Add draco-7_12_0 to package file * Update hash to zip version
2021-10-25eospac: new default version 6.5.0 (#26723)Kelly (KT) Thompson1-23/+58
* [pkg][new version] Provide eospac@6.5.0 and mark it as default. * Merge in changes found in #21629 * Mark all alpha/beta versions as deprecated. - Addresses @sethrj's recommendation - Also add a note indicated why these versions are marked this way.
2021-10-25Reduce verbosity of module files warningHarmen Stoppels1-3/+1
1. Currently it prints not just the spec name, but the dependencies + their variants + their compilers + their architectures + ... 2. It's clear from the context what spec the message applies to, so, let's not print the spec at all.
2021-10-25silo: new release 4.11 (#26876)Olivier Cessenat1-2/+17
2021-10-25py-nipype: add 1.7.0 (#26883)Manuela Kuhn1-1/+2
2021-10-25Return early in do_fetch when there is no code or a package is external (#26926)Harmen Stoppels3-7/+32
Co-authored-by: Ryan Krattiger <ryan.krattiger@kitware.com>
2021-10-25virtuals: simplify virtual handlingTodd Gamblin1-16/+5
These three rules in `concretize.lp` are overly complex: ```prolog :- not provider(Package, Virtual), provides_virtual(Package, Virtual), virtual_node(Virtual). ``` ```prolog :- provides_virtual(Package, V1), provides_virtual(Package, V2), V1 != V2, provider(Package, V1), not provider(Package, V2), virtual_node(V1), virtual_node(V2). ``` ```prolog provider(Package, Virtual) :- root(Package), provides_virtual(Package, Virtual). ``` and they can be simplified to just: ```prolog provider(Package, Virtual) :- node(Package), provides_virtual(Package, Virtual). ``` - [x] simplify virtual rules to just one implication - [x] rename `provides_virtual` to `virtual_condition_holds`
2021-10-25Add a unit test to prevent regressionMassimiliano Culpo6-2/+56
2021-10-25ASP-based solver: a package eligible to provide a virtual must provide itMassimiliano Culpo1-0/+5
fixes #26866 This semantics fits with the way Spack currently treats providers of virtual dependencies. It needs to be revisited when #15569 is reworked with a new syntax.
2021-10-25berkeleygw: force openmp propagation on some providers of blas / ffw-api ↵Miguel Dias Costa1-7/+8
(#26918)
2021-10-24hyperfine: new package (#26901)Michael Kuhn1-0/+23
2021-10-24Add new math solver versions (#26903)Satish Balay5-0/+7
* tasmanian: add @7.7 * butterflypack: add @2.0.0 * pflotran: add @3.0.2 * alquimia: add @1.0.9 * superlu-dist: add @7.1.1
2021-10-24meson: add 0.60.0 (#26921)Michael Kuhn1-0/+1
2021-10-24Mark flaky test_ci_rebuild as xfail (#26911)Scott Wittenburg1-0/+1
2021-10-24Fix pkg-config dependencies (#26912)Michael Kuhn9-9/+9
pkg-config and pkgconf are implementations of the pkgconfig provider.
2021-10-24glib: add 2.70.0 (#26915)Michael Kuhn2-1/+33
2021-10-24gcc: support alternate mechanism for providing GCC rpaths (#26590)Seth R. Johnson1-6/+59
* gcc: support runtime ability to not install spack rpaths Fixes #26582 . * gcc: Fix malformed specs file and add docs The updated docs point out that the spack-modified GCC does *not* follow the usual behavior of LD_RUN_PATH! * gcc: fix bad rpath on macOS This bug has been around since the beginning of the GCC package file: the rpath command it generates for macOS writes a single (invalid) rpath entry. * gcc: only write rpaths for directories with shared libraries The original lib64+lib was just a hack for "in case either has one" but it's easy to tell whether either has libraries that can be directly referenced.
2021-10-24python: add 3.9.7, 3.8.12, 3.7.12 and 3.6.15 (#26914)Michael Kuhn1-1/+5
2021-10-24py-vermin: add latest version 1.3.1 (#26920)Morten Kristensen2-2/+3
* py-vermin: add latest version 1.3.1 * Exclude line from Vermin since version is already being checked for Vermin 1.3.1 finds that `encoding` kwarg of builtin `open()` requires Python 3+.
2021-10-23flux-core, -sched: update to latest versions, fix czmq build error (#26840)Mark Grondona3-1/+77
* flux-core: fix compile error with czmq_containers * Fix build with clang and gcc-11 Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
2021-10-22[py-emcee] added versions 3.0.2 and 3.1.1 (#26910)Jen Herting1-1/+6
* [py-emcee] added version 3.0.2 * [py-emcee] added version 3.1.1