summaryrefslogtreecommitdiff
AgeCommit message (Collapse)AuthorFilesLines
2017-12-08Update for 'eccodes'. (#6604)Sergey Kosukhin5-22/+97
2017-12-08Update for 'grib-api'. (#6605)Sergey Kosukhin5-25/+181
2017-12-08Update openfast package to explicity pass MPI implementation during cmake ↵Jon Rood1-0/+3
configure. (#6590)
2017-12-07wxWidgets: Fix builds (#6560)Axel Huebl2-1/+15
- depends on GTK+ with X enabled (btw, non-X backends are deprecated/removed in GTK+) - patch for 3.0.1-3.0.2: missing include caused multiple `error: call of overloaded ‘abs(XYPOSITION)’ is ambiguous` (seen in GCC 6.3.0); fixed in 3.0.3+
2017-12-07config.py: fixed comments that refer to variables following them (#6585)Massimiliano Culpo1-11/+10
According to the documentation here: http://www.sphinx-doc.org/en/stable/ext/autodoc.html "For module data members and class attributes, documentation can either be put into a comment with special formatting (using a #: to start the comment instead of just #), or in a docstring after the definition."
2017-12-06r-pathview: Create new package. (#6582)lingnanyuan1-0/+51
2017-12-06r-kegggraph: Create new package. (#6580)lingnanyuan1-0/+43
2017-12-06r-org-hs-eg-db: Create new package. (#6581)lingnanyuan1-0/+38
2017-12-06Package 'libszip': update checksum and list_depth. (#6587)Sergey Kosukhin1-2/+2
2017-12-06CMAKE_INSTALL_RPATH is semicolon-separated. (#6577)Sergey Kosukhin1-1/+1
2017-12-06picard: Add version 2.16.0 (#6579)Eric1-0/+1
2017-12-06mrbayes: url now points to github + removed the deprecated sourceforge url ↵Audrey Thoma1-4/+3
(#6578)
2017-12-05Update CGNS and add CGNS capability to Trilinos (#6568)Jon Rood2-18/+55
* Update CGNS to be able to be used in Trilinos. * Updating Trilinos to be able to use CGNS. * Fixing wrong cmake defines in trilinos for enabling cgns and cleaning up cgns package. * Changing cgns parallel variant to mpi. Removing explicit dependence on parallel-netcdf in trilinos.
2017-12-05Update gnupg to 2.2.3 (#6573)nshtg4-4/+8
Updated dependencies: * libassuan 2.4.5 * libgcrypt 1.8.1 * npth 1.5
2017-12-05Add Maintainer (#6575)Axel Huebl15-0/+15
Add myself as maintainer to the packages we contributed and/or maintain the mainline from.
2017-12-05Add opennurbs package (#6570)Jon Rood1-0/+75
* Adding OpenNurbs package. * Fixing flake8 error. * Removing unused os import from opennurbs.
2017-12-05ADIOS 1.13.0: LZ4 & blosc support (#6572)Axel Huebl1-1/+16
Add additional transform libraries to ADIOS. Also modifies existing transforms to the versions they were introduced (otherwise this was resulting in unknown configure flags).
2017-12-05ADIOS 1.13.0: Newer SZ Versions (#6561)Axel Huebl1-1/+2
The latest release of ADIOS needs a newer version of SZ due to an upstream library naming change.
2017-12-05c-blosc: 1.12.1 (#6571)Axel Huebl1-0/+9
Adds a newer release of c-blosc, adds the new flags for external library builds, adds missing dependencies.
2017-12-04OpenJPEG: all version tuples have the same length. (#6526)Sergey Kosukhin1-4/+23
2017-12-04Added package r version 3.4.3 (#6565)Paschalis Korosoglou1-1/+2
2017-12-04libpng: CPPFLAGS for -I (#6563)Axel Huebl1-1/+1
Recent versions of `libpng` (e.g. 1.6.34) warn/abort that includes for `zlib` need to be passed properly via `CPPFLAGS`. This fixes it.
2017-12-04bamtools: Add version 2.5.0 (#6553)Eric1-0/+1
2017-12-04dealii: add scalapack and various cleanups (#6552)Denis Davydov3-72/+81
2017-12-04py-h5py: fixed a typo in the name of a dependency (#6540)Chien-Chang Feng1-1/+1
2017-12-03 Adding zlib dependence to xrootd to resolve #6545 (#6550)Benedikt Riedel1-0/+1
2017-12-03py-multiqc: Add version 1.3 (#6554)Eric1-0/+1
2017-12-03r-fftwtools: new package (#6532)Yifan Zhu1-0/+43
2017-12-03Rename variant static to shared (#6543)Paschalis Korosoglou1-2/+2
2017-12-03gcc: remove all variant (#5283)Denis Davydov1-5/+9
2017-12-02Add Kvasir MPL (#6529)Nils Deppe1-0/+38
2017-12-02salmon: Add version 0.9.1 (#6516)Eric1-0/+2
2017-12-01Paraview expects qt to have opengl (#6520)sknigh1-1/+2
2017-12-01Buildcache: relocate fixes (#6512)Patrick Gartung3-27/+60
* Updated function which checks if a binary file needs relocation. Previously this was incorrectly identifying ELF binaries as symbolic links (so they were being excluded from relocation). Added test to check that ELF binaries are not considered symlinks. * relocate_text was not replacing paths in text files. Added test to check that text files are relocated properly (i.e. paths in the file are converted to the new prefix). * Exclude backup files created by filter_file when installing from binary cache. * Update write_buildinfo_file method signature to distinguish between the spec prefix and the working directory for the binary cache package.
2017-12-01ADIOS: 1.13.0 (#6539)Axel Huebl1-0/+1
New release of ADIOS: 1.13.0.
2017-12-01Add new package py-libensemble (#6525)Stephen Hudson1-0/+45
2017-12-01py-dendropy: Create new package (#6528)Eric1-0/+42
2017-12-01Remove reference to deprecated spack md5 command (#6537)Adam J. Stewart1-2/+1
2017-12-01Added variant static for hwloc (#6538)Paschalis Korosoglou1-0/+2
2017-12-01r-udunits2: new package r-udunits2 (#6533)Yifan Zhu1-0/+37
2017-12-01r-units: new package (#6531)Yifan Zhu1-0/+42
2017-11-30gpg creation: added suggestion on how to set-up rngd (#6483)Massimiliano Culpo1-0/+16
2017-11-30'spack install': make conflict messages as verbose as 'spack spec' (#6436)Massimiliano Culpo4-15/+37
"spack spec" was providing helpful error information about conflicts that was missing from "spack install", this updates "spack install" to provide the same information.
2017-11-30Fix CGAL checksum and switch to more stable URL (#6511)Adam J. Stewart1-5/+6
2017-11-30add package py-lazy-object-proxy (#6489)healther1-0/+38
2017-11-30r-biomformat: Create new package. (#6517)lingnanyuan1-0/+48
2017-11-30r-phyloseq: Create new package. (#6518)lingnanyuan1-0/+53
2017-11-30r-nanotime: new package (#6519)Yifan Zhu1-0/+41
2017-11-30Flit package (#6260)Michael Bentley2-0/+93
Add initial build support for version 2.0-alpha.1
2017-11-29Improve docstring of spack.directives.extend (#6485)David Lukes1-2/+3
The original docstring had confusing wording re: what is going to symlinked and where when using the `extend` directive, and how exactly the symlinking is performed (not automatically on install, but using `spack activate`). See #5559.