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* Add new root versions and associated dependency constraints
* Please style guide
* Avoid conflicts where possible
* Untested prototype of macOS version detection
* Fixes for macOS version prototype
* More logical ordering
* More correctness and style fixes
* Try to use spack's macos_version
* Add some forgotten @s
* Actually, Spack can't build Python 3.6 anymore, and thus no older PyROOT
Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov>
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* pip/wheel/setuptools: extend PythonExtension
* Base class still required
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* Fix compile errors with latest HDF5 1.13.3
* format
* Update var/spack/repos/builtin/packages/hdf5-vol-async/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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This commit reworks the bootstrapping procedure to use Spack environments
as much as possible.
The `spack.bootstrap` module has also been reorganized into a Python package.
A distinction is made among "core" Spack dependencies (clingo, GnuPG, patchelf)
and other dependencies. For a number of reasons, explained in the `spack.bootstrap.core`
module docstring, "core" dependencies are bootstrapped with the current ad-hoc
method.
All the other dependencies are instead bootstrapped using a Spack environment
that lives in a directory specific to the interpreter and the architecture being used.
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* slightly raise tolerance of some tests
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replaced the reference to the undefined "bindir" variable with prefix.bin
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* pharokka and py-phanotate: new packages
* move libxcrypt edit
I don't need libxcrypt when not building dev infernal. Moving to a different PR
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Co-authored-by: teachers-uk-net <stuart.morrison@kcl.ac.uk>
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The cray manifest shows dependency information for cray-mpich, which we never previously cared about
because it can only be used as an external. This updates Spack's dependency information to make cray-mpich
specs read in from the cray external manifest usable.
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Signed-off-by: Loïc Pottier <pottier1@llnl.gov>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
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* initial changes for rocm recipes
* drop support for older releases
* drop support for older rocm releases - add more recipes
* drop support for older releases
* address style issues
* address style error
* fix errors
* address review comments
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* Added plumed version 2.8.1 including gromacs compatibility
* Corrected ~mpi and +mpi variants in new depends
* Fixed regression logic plumed+gromacs@2020.6 support
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* LAMMPS: Add version 20220803 and 20220623.1
* LAMMPS: Add 20220915, 20221103, and 20220623.2
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The 0.9.0-beta requires yaml-cpp for parsing the configuration file format in YAML.
P.S. I'm using https://www.conventionalcommits.org/en/v1.0.0/#specification for this commit message.
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* epsic: add epsic package to spack
* psrcat: add psrcat to spack
* psrchive: add psarchive to spack
* tempo: add tempo package to spack
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See release notes at https://github.com/potassco/clingo/releases/tag/v5.6.2
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* Add the very first version of cernlib
* Update package.py
* Update package.py
Co-authored-by: Andrii Verbytskyi <andriish@pcatlas18.mpp.mpg.de>
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* py-nbclassic: add 0.4.8 and new package py-notebook-shim
* Add missing dependencies
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All the vermin annotations we were using were for optional features introduced in early
Python 3 versions. We no longer need any of them, as we only support Python 3.6+. If we
start optionally using features from newer Pythons than 3.6, we will need more vermin
annotations.
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
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Co-authored-by: sxs-bot <sxs-bot@users.noreply.github.com>
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Co-authored-by: github-actions[bot] <github-actions[bot]@users.noreply.github.com>
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* Add conflicts with gcc@12.2.0
* Add more links for reference
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We no longer support Python <3.6, so we don't need to check whether Python supports SSL
verification in `spack.util.web`.
- [x] Remove a bunch of logic we needed to appease Python 2
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* py-mne: add 1.2.2 and depencendy packages
* py-mne: add 1.2.3
* Remove unnecessary when statement
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We've stopped supporting Python 2, and contributors are noticing that our CI no longer
allows Python 2.7 comment type hints. They end up having to adapt them, but this adds
extra unrelated work to PRs.
- [x] Move to 3.6 type hints across the entire code base
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* doxygen: add build-tool tag
This allows it to be included automatically as an external. No one links against doxygen so this should be ok.
* doxygen: add self as maintainer
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* vecgeom: add new 1.2.1 version
* vecgeom: introduce conflict between gcc/cuda
Recent tests of vecgeom in Spack environments have shown that the build
with +cuda fails with GCC >= 11.3 and CUDA < 11.7 with error
...lib/gcc/x86_64-pc-linux-gnu/11.3.0/include/serializeintrin.h(41):
error: identifier "__builtin_ia32_serialize" is undefined
1 error detected in the compilation of
".../VecGeom/source/BVHManager.cu".
Other GCC/CUDA combinations appear o.k.
Avoid this error in spack, and document it for users, with a conflict
directive to express the restriction.
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* py-alphafold: update to 2.2.4, update dependencies
* style
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