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2023-08-09Changes the way MPICC is set (#39327)Cristian Di Pietrantonio1-7/+2
2023-08-09nwchem: make sure to link both single and double precision fftw libraries. ↵Cristian Di Pietrantonio1-1/+1
(#39333) With the previous version of the recipe I would get linking errors due to missing `-lfftw3f`. Co-authored-by: Cristian Di Pietrantonio <cdipietrantonio@pawsey.org.au>
2023-08-09protobuf: fix build for 3.21 on Centos 8 (#39162)Martin Aumüller1-0/+7
apply upstream patch
2023-08-09fq: add new package (#39205)pabloaledo1-0/+23
Signed-off-by: Pablo <pablo.aledo@seqera.io>
2023-08-09containerize: ensure bootstrap images contain all system dependencies (#36818)Jonathon Anderson9-3/+27
This also makes `spack bootstrap status` exit 1 if some dependency is missing
2023-08-09idg: add new package (#39316)Cristian Di Pietrantonio1-0/+28
Co-authored-by: Cristian Di Pietrantonio <cdipietrantonio@pawsey.org.au>
2023-08-09miniocli: add new package (#39318)Cristian Di Pietrantonio1-0/+49
Co-authored-by: Cristian Di Pietrantonio <cdipietrantonio@pawsey.org.au> Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-08-09esmf: specify build dependency on CMake when using internal ParallelIO (#39347)Gerhard Theurich1-0/+1
2023-08-09Spec versions: allow `git.` references for branches with `/` (#38239)Peter Scheibel3-3/+36
2023-08-09py-lightly: add v1.4.15 (#39348)Adam J. Stewart1-0/+2
2023-08-09py-torchmetrics: add v1.0.3 (#39349)Adam J. Stewart1-0/+1
2023-08-09ior: add lustre variant (#39320)Cristian Di Pietrantonio1-0/+15
Co-authored-by: Cristian Di Pietrantonio <cdipietrantonio@pawsey.org.au>
2023-08-09hypre: fix typo in --with-sycl option. (#39351)Jon Rood1-1/+1
2023-08-09caliper: add KOKKOS variant. (#39312)Cristian Di Pietrantonio1-0/+2
Co-authored-by: Cristian Di Pietrantonio <cdipietrantonio@pawsey.org.au> Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-08-09beast2: add dependency on libbeagle. (#39311)Cristian Di Pietrantonio1-0/+3
Co-authored-by: Cristian Di Pietrantonio <cdipietrantonio@pawsey.org.au>
2023-08-09chgcentre: fix compilation error by using explicit casting (#39315)Cristian Di Pietrantonio2-0/+17
Co-authored-by: Cristian Di Pietrantonio <cdipietrantonio@pawsey.org.au>
2023-08-09Push conflict between rocm and blt down to packages that actually use blt ↵Massimiliano Culpo8-5/+11
(#39339)
2023-08-08go: add v1.20.6 and v1.19.11, deprecate previous versions due to ↵Alec Scott1-39/+17
CVE-2023-29405 (#39149)
2023-08-08Update py-gtdbtk to 2.3.2 (#39296)snehring2-7/+12
* fastani: adding version 1.34 and changing build_system * py-gtdbtk: adding version 2.3.2 * fastani: adding requested changes * py-gtdbtk: adding requested changes * fastani: remove conditional
2023-08-08trilinos: Add version 14.4.0 (#39340)Paul Kuberry1-0/+1
2023-08-08[py-model-index] new package (#39301)Jen Herting1-0/+21
2023-08-08[py-opendatalab] New package (#39302)Jen Herting1-0/+26
2023-08-08[py-linkify-it-py] New package (#39305)Jen Herting1-0/+21
* [py-linkify-it-py] New package * [py-linkify-it-py] Added version 1.0.3
2023-08-08e4s ci: add libpressio (#34222)eugeneswalker3-0/+8
* e4s ci: add libpressio * libpressio ~cuda, +cuda: add +mgard
2023-08-08Ensure that all variants have a description (#39025)Adam J. Stewart63-167/+341
* Ensure that all variants have a description * Update mock packages too * Fix test invocations * Black fix * mgard: update variant descriptions * flake8 fix * black fix * Add to audit tests * Relax type hints * Older Python support * Undo all changes to mock packages * Flake8 fix
2023-08-08Name clash error message include hash of clashing packages (#39234)simonLeary421-1/+2
Co-authored-by: Simon <simonleary@umass.edu>
2023-08-08hpx: add v1.9.1 (#39336)Mikael Simberg1-0/+1
2023-08-08pika-algorithms: add v0.1.4 (#39335)Mikael Simberg1-0/+2
2023-08-08OpenMPI: require compilers for F77 and "modern" Fortran (#39266)Paul Kuberry1-1/+1
2023-08-08ML CI: get more packages working on macOS (#39199)Adam J. Stewart2-24/+30
2023-08-08C-Blosc2: add v2.10.1 (#39297)Axel Huebl1-1/+5
This adds the latest C-Blosc2 release, the first to add CMake CONFIG install files for easier downstream usage of the installed library and CMake targets.
2023-08-08aocc: add v4.1.0 (#39280)Carlos Bederián1-0/+5
2023-08-08parallel-hashmap: add new package (#39299)Jen Herting2-0/+31
2023-08-08plumed: add v2.9.0, v2.8.3 (#39324)Cristian Di Pietrantonio1-0/+3
Co-authored-by: Cristian Di Pietrantonio <cdipietrantonio@pawsey.org.au>
2023-08-08cpp-logger: add new package (#39303)Hariharan Devarajan1-0/+18
2023-08-08Fix broken inode assertion (#39188)Harmen Stoppels1-1/+1
2023-08-08py-cartopy: add v0.22.0 (#39309)Adam J. Stewart1-29/+39
2023-08-08Add darshan 3.4.4 release (#39310)shanedsnyder3-0/+3
2023-08-07package:py-wand add build env var, add new version (#39281)Sinan1-4/+3
* package:py-wand add build env var, add new version * fix style * [@spackbot] updating style on behalf of Sinan81 * improve * improve --------- Co-authored-by: sbulut <sbulut@3vgeomatics.com> Co-authored-by: Sinan81 <Sinan81@users.noreply.github.com>
2023-08-07[py-marshmallow] added version 3.19.0 (#38972)Jen Herting1-0/+2
2023-08-07[py-srsly] added version 2.4.6 (#38970)Jen Herting1-0/+5
* [py-srsly] added version 2.4.6 * [py-srsly] added dependency on py-catalogue * [py-srsly] added conflict on newer versions of py-cython
2023-08-07[py-pathy] new package (#38968)Jen Herting1-0/+19
* [py-pathy] new package * [py-pathy] removed lines for unsupported versions of python
2023-08-07[py-gensim] added version 4.3.1 (#38272)Jen Herting1-1/+10
* [py-gensim] added version 4.3.1 * [py-gensim] flake8 * [py-gensim] removed version limitation on py-cython
2023-08-07[py-clean-text] added version 0.6.0 (#38271)Jen Herting1-2/+5
* [py-clean-text] added missing dependency on py-poetry * [py-clean-text] added version 0.6.0 * [py-clean-text] Made required changes
2023-08-07freeglut: set correct library name (#39300)Melven Roehrig-Zoellner1-0/+4
2023-08-07h5bench: include tests for E4S and new version (#37830)Jean Luca Bez1-0/+28
* include tests for h5bench * update to new test format * update path * improve description and detect MPI runner * fix test name * Include new release * update with corrections * include SLURM dependency and reduce test to one process * fixes on filters * fix on oversubscribe * suggested fixes --------- Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2023-08-07libdeflate: new versions, switch to cmake (#39062)Harmen Stoppels1-3/+22
2023-08-07py-torchmetrics: add v1.0.2 (#39274)Adam J. Stewart1-2/+13
2023-08-07py-timm: add v0.9.5 (#39275)Adam J. Stewart1-0/+1
2023-08-07samtools: add 1.17 (#39287)Christopher Christofi1-0/+2
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