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Co-authored-by: sxs-bot <sxs-bot@users.noreply.github.com>
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We added unification semantics for parsing specs from the CLI, but there are a couple
of special cases in which we can avoid calls to the concretizer for speed when the
specs can all be resolved by lookups.
- [x] special case 1: solving a single spec
- [x] special case 2: all specs are either concrete (come from a file) or have an abstract
hash. In this case if concretizer:unify:true we need an additional check to confirm
the specs are compatible.
- [x] add a parameterized test for unifying on the CI
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Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
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* geomodel: Allow configuring C++ standard
* drop c++11
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* parsec: update urls
* parsec: fix homepage
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* xfsprogs: fix dependency on gettext
* changed dependency on gettext in xfsprogs
Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
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Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
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* py-constantly: added version 23.10.4
* py-constantly: fixed dependency on py-versioneer
* py-constantly: updated py-versioneer dependency
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
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Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
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Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
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* py-cryptography: add v43.0.3 (switch to maturin)
* py-cryptography: deny some setuptools versions
* py-cryptography: depends_on py-setuptools-rust when @42, no range
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Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
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This new version is compatible with Tcl 9.0. It also requires
'util-linux' for new logging capabilities.
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* libunwind: Add 1.7.2 and 1.8.1
* libunwind: Remove deprecated 1.1 version
* libunwind: Add newer *-stable branches: Remove 1.5-stable branch as well as cleanup.
* libunwind: Use GitHub url for all versions
* libunwind: Add conflict for PPC and 1.8.*
* libunwind: Add conflict for aarch64 and 1.8:
Build fails with
aarch64/Gos-linux.c: In function '_ULaarch64_local_resume':
aarch64/Gos-linux.c:147:1: error: x29 cannot be used in asm here
}
^
aarch64/Gos-linux.c:147:1: error: x29 cannot be used in asm here
make[2]: *** [Makefile:4795: aarch64/Los-linux.lo] Error 1
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`py-deepsig-biocomp`), new packages (`py-pyhmmer`, `py-pyrodigal`) (#47277)
* added updated versions
* added pyhmmer
* updated infernal
* fix blast-plus for apple-clang
* fix py-biopython build on apple-clang
* remove erroneous biopython dep: build issue is with python 3.8, not biopython
* deepsig python 3.9: expanding unnecessary python restrictions
* add pyrodigal
* fix unnecessarily strict diamond version
* builds and updates: blast-plus indexing broken, still need to test db download and bakta pipeline
* builds and runs
* revert blast-plus changes: remove my personal hacks to get blast-plus to build
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* fix the build error during compilation of rocdecode.was dependent on libva-devel packag
* address review comment
* address review changes.commit the changes
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* Adding sha for 7.4 release of OSU Micro Benchmarks
* Adds the sha256sum for the OSU mirco benchmarks 7.5 release.
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* py-fsspec-xrootd: new package
* py-fsspec-xrootd: depends_on python@3.8:
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* Add two_level_namespace variant (default is disabled) for MacOS to enable building
executables and libraries with two level namespace enabled.
* Addressed reviewer comments.
* Moved two_level_namespace variant ahead of the patch that uses that variant to
get concretize to work properly.
* Removed extra print statements
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Fix typo wrt @xiaoyeli
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* rsyslog: add v8.2410.0
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* py-pyppeteer: new package
* py-pyee: new package (v11.1.1, v12.0.0)
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* pixman: add v0.44.0 (switch to meson)
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Co-authored-by: t. chantrait <teddy.chantrait@cea.fr>
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* soqt: Add SoQt package
The geomodel package needs this if visualization is turned on.
* make qt versions explicit
* use virtual dependency for qt
* pr feedback
Remove myself as maintainer
Remove v1.6.0
Remove unused qt variant
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Take a simpler approach to listing variant options -- store them in variables instead of trying to
roundtrip them through metadata dictionaries.
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* Compiler.default_libc: early exit on darwin/win
* use .cc when testing c++ compiler if c compiler is missing
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-Wno-error=missing-template-arg-list-after-template-kw (#47477)
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This addresses part [1] of #46345
#44713 introduced a bug where all non-spec query parameters like date
ranges, -x, etc. were ignored when an env was active.
This fixes that issue and adds tests for it.
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Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
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* Move concretization tests to the same folder
Signed-off-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
* Fix for clingo-cffi
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Signed-off-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
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* butterflypack: add v3.2.0
* strumpack: add v8.0.0
* restrict fj patch to @1.2.0
* Update var/spack/repos/builtin/packages/butterflypack/package.py
Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
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Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
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`spack mirror add` and `set` now have flags `--oci-password-variable`, `--oci-password-variable`, `--s3-access-key-id-variable`, `--s3-access-key-secret-variable`, `--s3-access-token-variable`, which allows users to specify an environment variable in which a username or password is stored.
Storing plain text passwords in config files is considered deprecated.
The schema for mirrors.yaml has changed, notably the `access_pair` list is generally replaced with a dictionary of `{id: ..., secret_variable: ...}` or `{id_variable: ..., secret_variable: ...}`.
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the py-oracledb package only has a single outdated version available in its recipe. this PR adds a much broader range of versions and their corresponding checksums.
* add more versions of py-oracledb
* update py-oracledb recipe
* add py-cython version dependencies
* tweak py-cython version dependencies
* remove older versions of py-oracledb
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