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2022-07-13ghostscript-fonts: fix URL (#31360)Rémi Lacroix1-2/+3
2022-07-13Hermes: add v0.7.0-beta, remove older versions (#31544)H. Joe Lee1-4/+5
2022-07-13vtk-m: add v1.8.0 (#31220)Vicente Bolea4-5/+5
2022-07-13py-ford: add v6.1.13 (#31483)Elizabeth Sherrock1-0/+1
2022-07-13Open3D: fix build with external fmt (#31547)Adam J. Stewart1-2/+4
2022-07-13py-pytorch-lightning: add v1.6.5 (#31548)Adam J. Stewart1-0/+1
2022-07-13Tower Agent / Tower CLI: new packages (#31539)Marco De La Pierre3-0/+64
2022-07-12`spack.repo.get()` can only be called on concrete specs (#31411)Massimiliano Culpo79-1560/+1239
The goal of this PR is to make clearer where we need a package object in Spack as opposed to a package class. We currently instantiate a lot of package objects when we could make do with a class. We should use the class when we only need metadata, and we should only instantiate and us an instance of `PackageBase` at build time. Modifications: - [x] Remove the `spack.repo.get` convenience function (which was used in many places, and not really needed) - [x] Use `spack.repo.path.get_pkg_class` wherever possible - [x] Try to route most of the need for `spack.repo.path.get` through `Spec.package` - [x] Introduce a non-data descriptor, that can be used as a decorator, to have "class level properties" - [x] Refactor unit tests that had to be modified to reduce code duplication - [x] `Spec.package` and `Repo.get` now require a concrete spec as input - [x] Remove `RepoPath.all_packages` and `Repo.all_packages`
2022-07-12trilinos: add new release 13.4.0 and use sha256 instead of commit hashes ↵Seth R. Johnson1-4/+5
(#31277)
2022-07-12spiner: update dependencies (#31486)Richard Berger1-2/+2
2022-07-12py-nbmake: add v1.3.0; py-nbclient: add v0.6.6, 0.5.13; py-traitlets: add ↵Adam J. Stewart3-11/+36
v5.3.0 (#31513) * py-nbmake: add v1.3.0 * Add newer versions
2022-07-12amdblis: add 3.2 (#31518)Carlos Bederián1-0/+1
2022-07-12amdlibflame: add 3.2 (#31519)Carlos Bederián1-0/+1
2022-07-12amdfftw: add 3.2 (#31520)Carlos Bederián1-0/+1
2022-07-12fixed the cgal recipe and added the latest release. (#31523)nicolas le goff1-1/+11
* fixed the cgal recipe and added the latest release. * Update var/spack/repos/builtin/packages/cgal/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * updated cgal recipe to new URL for tarballs Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-07-12file_cache.py: idempotent remove without races (#31477)Harmen Stoppels2-4/+19
There's a race condition in `remove()` as the lockfile is removed after releasing the lock, which is a problem when another process acquires a write lock during deletion. Also simplify life a bit in multiprocessing when a file is possibly removed multiple times, which currently is an error on the second deletion, so the proposed fix is to make remove(...) idempotent and not error when deleting non-existing cache entries. Don't tests for existence of lockfile, cause windows/linux behavior is different
2022-07-12compression.py: buffered copy (#31533)Harmen Stoppels1-3/+4
2022-07-12arm-forge: add 22.0.2 and 22.0.3. (#31432)RichardABunt1-0/+6
2022-07-12lammps package: added fftw_precision variant (#31459)Marco De La Pierre1-6/+12
2022-07-12WarpX: 22.07 (#31508)Axel Huebl2-1/+3
Update `warpx` & `py-warpx` to the latest release, `22.07`.
2022-07-12environment.py: only acquire write lock when necessary (#31493)Harmen Stoppels1-3/+4
2022-07-12OpenMX: add v3.9 (#31466)marcosmazz1-14/+30
Co-authored-by: Marcos Mazzini - <mmazzini@serafin.ccad.unc.edu.ar>
2022-07-12py-gevent: deprecated compiler flags (#31469)Stephen Sachs2-0/+17
Co-authored-by: Stephen Sachs <stesachs@amazon.com>
2022-07-12abseil: add v20220623 (#31507)miheer vaidya1-0/+1
2022-07-12amr-wind: add "ascent" variant (#31376)Nicholas Brunhart-Lupo1-1/+15
2022-07-12env depfile: add missing touch (#31494)Harmen Stoppels1-0/+1
Oversight in #31433, the non-phony `env` target was missing a file being created for it, which can cause make to infinitely loop when including multiple generated makefiles.
2022-07-12cuda: New version 11.5.2 (#31463)Erik Schnetter1-0/+4
2022-07-12build(deps): bump actions/setup-python from 4.0.0 to 4.1.0 (#31526)dependabot[bot]4-19/+19
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4.0.0 to 4.1.0. - [Release notes](https://github.com/actions/setup-python/releases) - [Commits](https://github.com/actions/setup-python/compare/d09bd5e6005b175076f227b13d9730d56e9dcfcb...c4e89fac7e8767b327bbad6cb4d859eda999cf08) --- updated-dependencies: - dependency-name: actions/setup-python dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2022-07-12hpcviewer: add v2022.06 (#31532)Mark W. Krentel1-0/+4
2022-07-12Remove os.getcwd from function signature (#31480)Massimiliano Culpo1-3/+2
fixes #29730 This is also wrong since it binds the directory at the time of module import, rather than the one at the time of function call.
2022-07-12Sanitize ownership when extracting tarfiles (#31524)Jonathon Anderson1-3/+9
2022-07-11py-hatchling: add new packages, document new build backend (#31512)Adam J. Stewart3-2/+72
* py-hatchling: add new package, document new build backend * Minor doc changes Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com> Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-07-11glib: add 2.72.3 (#31516)Michael Kuhn1-0/+1
2022-07-11Fix for sanity check failure in spack upstream code: atmi, hip-rocclr (#31454)renjithravindrankannath2-7/+9
* Fix for sanity check failure in spack upstream code * Style check failure correction * Correction as per the review comments
2022-07-11Metall package: add v0.21 (#31482)Keita Iwabuchi1-0/+1
* Metall package: add dependency to GCC for build test * Package Metall: add v.017 * Package Metall: update the package file * Update var/spack/repos/builtin/packages/metall/package.py Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com> * Metall package: add v0.18 and v0.19 * Metall Package: add v0.20 * Metall package: add v0.21 Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
2022-07-11ports-of-call: new version 1.2.0, simplify (#31485)Richard Berger1-1/+2
2022-07-11[cppcodec] new package (#31506)miheer vaidya1-0/+20
2022-07-11py-mypy: add v0.961 (#31503)Adam J. Stewart1-1/+10
2022-07-11py-gpytorch: add v1.7.0 (#31504)Adam J. Stewart1-0/+4
2022-07-11py-numpy: add v1.23.1 (#31510)Adam J. Stewart1-0/+1
* py-numpy: add v1.23.1 * Remove packaging dep
2022-07-11py-torchgeo: add v0.3.0 (#31514)Adam J. Stewart1-45/+65
2022-07-11ucx: add 1.13.0 (#31517)Carlos Bederián1-0/+1
2022-07-11julia: fix patch (#31515)Michael Kuhn1-1/+1
2022-07-10man-db: Don't use DESTDIR (#31492)Harmen Stoppels1-7/+4
2022-07-08openssl: New version 1.1.1q (#31487)Erik Schnetter1-2/+4
2022-07-08py-setuptools: add v63.0.0 (#31444)Adam J. Stewart1-0/+1
2022-07-08vim: deprecate 9.0.0000, add 9.0.0045 (#31490)Harmen Stoppels1-1/+2
2022-07-07py-panaroo, py-edlib, and py-intbitset: new packages (#31452)Luke Diorio-Toth3-0/+78
2022-07-07Package/py phylophlan (#31422)Erin Newcomer1-0/+27
* py-phylophlan: new package * py-phyloseq: new package * py-phylophlan: style fix * py-phylophlan: fixed dependencies * py-phylophlan: style fix
2022-07-07OpenBabel: Make building with GUI an option (#31456)Tamara Dahlgren1-0/+3