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2020-08-13gcc: improve detection functions (#17988)Massimiliano Culpo1-10/+40
* Don't detect Apple's clang as gcc@4.2.1 * Avoid inspecting links except for Cray platforms * Always return string paths from compiler properties * Improved name-based filtering (apt-based packages)
2020-08-13IOR package: added 3.3.0rc1 and develop version (#18036)Nikolay Simakov1-1/+3
* IOR package: added 3.3.0rc1 and develop version * IOR package: reordered versions, set 3.2.1 as preferred
2020-08-13Make mpich buildable without fortran (#17964)Harmen Stoppels1-12/+29
When the user explicitly sets ~fortran, mpich builds without fortran support. This will make building C/C++ libraries using clang easier, since clang does not offer a fortran compiler by default (yet). Since the user has to disable Fortran support explicitly, this change is not breaking.
2020-08-13fix buildcache create for environments with uninstalled root specs (#17859)Harmen Stoppels1-13/+21
* Handle uninstalled rootspecs in buildcache - Do not parse specs / find matching specs when in an environment and no package string is provided - Error only when a spec.yaml or spec string are not installed. In an environment it is fine when the root spec does not exist. - When iterating through the matched specs, simply skip uninstalled packages
2020-08-13"spack config update" can handle comments in YAML files (#18045)Massimiliano Culpo2-1/+37
fixes #18031 With this fix "spack config update" can update YAML files that contain comments, while previously it couldn't.
2020-08-13update vtk-h release (#18052)Matt Larsen1-0/+1
2020-08-13Merge tag 'v0.15.4' into developTodd Gamblin4-6/+27
2020-08-13llvm: added external detection capabilities (#17989)Massimiliano Culpo1-2/+107
* llvm: added external detection capabilities * Added comment with reference to external package detection docs * Fix typo in a comment
2020-08-13update CHANGELOG.md for 0.15.4v0.15.4Todd Gamblin1-0/+17
2020-08-13bump version number for 0.15.4Todd Gamblin3-6/+10
2020-08-13Move Python 2.6 unit tests to Github Actions (#17279)Massimiliano Culpo7-105/+55
* Run Python2.6 unit tests on Github Actions * Skip url tests on Python 2.6 to reduce waiting times * Skip foreground background tests on Python 2.6 to reduce waiting times * Removed references to Travis in the documentation * Deleted install_patchelf.sh (can be installed from repo on CentOS 6)
2020-08-13Buildcache: bindist test without invoking spack compiler wrappers. (#15687)Patrick Gartung8-9/+911
* Buildcache: * Try mocking an install of quux, corge and garply using prebuilt binaries * Put patchelf install after ccache restore * Add script to install patchelf from source so it can be used on Ubuntu:Trusty which does not have a patchelf pat package. The script will skip building on macOS * Remove mirror at end of bindist test * Add patchelf to Ubuntu build env * Revert mock patchelf package to allow other tests to run. * Remove depends_on('patchelf', type='build') relying instead on * Test fixture to ensure patchelf is available. * Call g++ command to build libraries directly during test build * Flake8 * Install patchelf in before_install stage using apt unless on Trusty where a build is done. * Add some symbolic links between packages * Flake8 * Flake8: * Update mock packages to write their own source files * Create the stage because spec search does not create it any longer * updates after change of list command arguments * cleanup after merge * flake8
2020-08-13Use "fetch-depth: 0" to retrieve all history from remoteMassimiliano Culpo4-10/+19
2020-08-13Simplified YAML files for Github Actions workflowsMassimiliano Culpo4-18/+7
Updated actions where needed
2020-08-13Group tests with similar duration togetherMassimiliano Culpo4-76/+72
Style and documentation tests take just a few minutes to run. Since in Github actions one can't restart a single job but needs to restart an entire workflow, here we group tests with similar duration together.
2020-08-13docs: document releases and branches in SpackTodd Gamblin6-11/+405
- [x] Remove references to `master` branch - [x] Document how release branches are structured - [x] Document how to make a major release - [x] Document how to make a point release - [x] Document how to do work in our release projects
2020-08-13Remove references to `master` from CITodd Gamblin5-9/+5
- [x] remove master from github actions - [x] remove master from .travis.yml - [x] make `develop` the default branch for `spack ci`
2020-08-13Moved flake8, shell and documentation tests to Github Action (#17328)Massimiliano Culpo6-125/+100
* Move flake8 tests on Github Actions * Move shell test to Github Actions * Moved documentation build to Github Action * Don't run coverage on Python 2.6 Since we get connection errors consistently on Travis when trying to upload coverage results for Python 2.6, avoid computing coverage entirely to speed-up tests.
2020-08-12Bugfix for #17999: use cudart instead of cuda. (#18000)Robert Blake1-1/+1
This is needed because libcuda is used by the driver, whereas libcudart is used by the runtime. CMake searches for cudart instead of cuda. On LLNL LC systems, libcuda is only found in compat and stubs directories, meaning that the lookup of libraries fails.
2020-08-12bugfix: fix spack -V with releases/latest and shallow clones (#17884)Todd Gamblin1-2/+2
`spack -V` stopped working when we added the `releases/latest` tag to track the most recent release. It started just reporting the version, even on a `develop` checkout. We need to tell it to *only* search for tags that start with `v`, so that it will ignore `releases/latest`. `spack -V` also would print out unwanted git eror output on a shallow clone. - [x] add `--match 'v*'` to `git describe` arguments - [x] route error output to `os.devnull`
2020-08-12Buildcache create: change NoOverwriteException back to a warning as in v0.14 ↵Patrick Gartung1-3/+6
(#17832) * Change buildcache create `NoOverwriteException` back to a warning.
2020-08-12Hotfix: move CUDAHOSTCXX (#17826)Axel Huebl1-2/+3
* Hotfix: move CUDAHOSTCXX Set only in dependent packages. * dependent compiler
2020-08-12bugfix: fix spack buildcache list --allarchTodd Gamblin3-17/+53
`spack buildcache list` was trying to construct an `Arch` object and compare it to `arch_for_spec(<spec>)`. for each spec in the buildcache. `Arch` objects are only intended to be constructed for the machine they describe. The `ArchSpec` object (part of the `Spec`) is the descriptor that lets us talk about architectures anywhere. - [x] Modify `spack buildcache list` and `spack buildcache install` to filter with `Spec` matching instead of using `Arch`.
2020-08-12architecture: make it easier to get a Spec for the default archTodd Gamblin1-2/+15
- [x] Make it easier to get a `Spec` with a proper `ArchSpec` from an `Arch` object via new `Arch.to_spec()` method. - [x] Pull `spack.architecture.default_arch()` out of `spack.architecture.sys_type()` so we can get an `Arch` instead of a string.
2020-08-13gotcha: fixed building v0.0.2 on ARM (#18012)h-denpo2-20/+4
2020-08-12allow GNUPGHOME to come from SPACK_GNUPGHOME in env, if set (#17139)eugeneswalker1-1/+1
2020-08-12eztrace: add space, --linkfortran, -Wl (#17801)ketsubouchi1-0/+20
2020-08-12Axom + Conduit updates (#17863)Chris White3-11/+28
* Loosen Axom's variants, add shared variant for axom, fix clang/xlf rpath'ing problem on blueos * Fix flake8 * Add main branch to list of known git branches
2020-08-12mpich, mvapich2: fixed setup_*_environment (#18032)Massimiliano Culpo2-4/+8
fixes #18028 Since now external packages support multiple modules the correct thing to do is to check if the name of the *first* module to be loaded contains the string "cray"
2020-08-12Make the build stage of OpenSSL parallel (#18024)Harmen Stoppels1-4/+4
2020-08-12libpciaccess: New version 0.16 (#18035)Erik Schnetter1-0/+1
2020-08-12cmake: Add version 3.16.3 (#18034)Erik Schnetter1-0/+1
`cmake @3.16.3` is the version provided by Ubuntu 20.04. Adding this version here avoids the warning ``` ==> Warning: Missing a source id for cmake@3.16.3 ``` when using the system `cmake`.
2020-08-12Spack recipes for ROCm software components-Phase1 (#17422)srekolam26-0/+1027
* Spack recipes for ROCm Stage 1 Build components * fix flake8 errors * fixes for flake8 errors * Add a patch for cmake 3.x suport * Fix rpath issue where hsa-rocr-dev does not allow it to be filled in by spack * Remove inherited cmake args from comgr * Make hsakmt-roct compile: no -Werror because with const cast in numa, and actually add the numa dependency * Remove redundant cmake args which is inherited * Fix some dependencies * Fix some python 2.x compatibilities * Add amd gpu targets to rocfft * Make comgr a link dep of rocm-dbgapi and remove redundant cmake args * Remove redundant cmake args * Remove more redundant cmake args * Final redundant args * Use cmake 3.x instead of a fixed version * Remove random variable * Use installed rocclr instead of nonexisting directory * Don't build outside the staging folder * Deploy some missing cmake target file * Formatting * Fix target list * Properly handle the rocclr dependency * Formatting * Fix vermin test * Make all 3.5.0 package depend exactly on eachother * Add a few missing link dependencies * Fix flake8 * Remove some other redundant flags * Add gcc install prefix for gcc builds of llvm-amdgpu * review changes for the spack recipes * Do not hard-code versions * Fix atmi install - no more relative rpaths outside of install directory (required patch) - fix build -> link dependencies - remove unused build dependency * Fix flake8 errors * Remove unused variable and make things python 2.x compatible * Fix flake8 * Move compiler config from rocfft -> hipcc * Remove redundant dependency on fftw-api * Remove redundant import * Avoid hitting the ROCM_PATH variable altogether with a patch; also just fill in all variables * Add missing deps z3, zlib and ncurses+termlib to llvm-amdgpu * Fix perl shebang and add dep * Fix typo and patch HIP_CLANG_ROOT detection in hip's cmake files * fixing build failure due z3 and adding zlib for rocgdb * new changes to add z3,curses dependency for llvm-amdgpu * fix flake8 error Co-authored-by: root <root@localhost.localdomain> Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2020-08-12petsc: add explicit build dependency: diffutils (#17979)eugeneswalker1-0/+2
2020-08-12Update FleCSPH package (#17997)Julien Loiseau1-9/+18
* Update FleCSPH package * Flake8 corrections * Update FleCSI version
2020-08-12Adding externals support for CUDA. (#18011)Robert Blake1-0/+10
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2020-08-12Use configure-release instead of configure for UCX (#17941)Jon Rood1-2/+4
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-12librsb: added v1.2.0.9 (#18015)Michele Martone1-1/+2
2020-08-12weechat: added new package at v2.9 (#17996)Andrew W Elble1-0/+53
2020-08-12Respect $PATH ordering when registering compilers (#17967)Harmen Stoppels2-3/+33
2020-08-12ParaView: added v5.8.1 (#17995)Ethan Stam1-0/+1
2020-08-12Bugfix for #17999: use cudart instead of cuda. (#18000)Robert Blake1-1/+1
This is needed because libcuda is used by the driver, whereas libcudart is used by the runtime. CMake searches for cudart instead of cuda. On LLNL LC systems, libcuda is only found in compat and stubs directories, meaning that the lookup of libraries fails.
2020-08-12podio: added dependency on jinja2 for newer versions (#17990)Thomas Madlener1-0/+1
2020-08-11Adding external recognition to perl (#17756)Robert Blake1-0/+37
* Perl now has external recognition. * Changing code to use the new external packages API.
2020-08-11Libtool: add spack external find support (#16691)Adam J. Stewart1-1/+10
* Libtool: add spack external find support * Less specific regex * match -> search * Clarify that min returns first alphabetically, not shortest * Simplify version determination
2020-08-11elpa: add cuda support, add libtool dep, fix parallel build failure (#17969)Harmen Stoppels1-3/+20
2020-08-11py-pyinstrument: added v3.1.3 (#17976)Adam J. Stewart1-1/+2
2020-08-11py-sphinx: added v3.2.0 (#17977)Adam J. Stewart1-2/+3
2020-08-11py-sphinx-rtd-theme: added v0.5.0 (#17978)Adam J. Stewart1-4/+8
2020-08-11libcroco: added build dependency on pkg-config (#17970)darmac1-0/+1