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* Add new versions and deprecations [CVE-2022-46392]
* remove maintainer, order versions by major no
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* Update target names for Gitlab pipelines
* Remove handling of deprecated names for graviton
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Co-authored-by: Tooley, Phil <phil.tooley@amd.com>
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1. add version 2023.03.01
2. add variant 'python' that supports unwinding python source
3. clean up some things with the cray variant
4. require the latest libmonitor
5. fix sha256 checksum for url patch
6. delete rocm 5.3 from older versions
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* Backport a patch for relocatable `gmx` executable.
* spack style fixes
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Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
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* cleaned up style, linked to external htslib
* removed htslib/bcfrools/samtools deps, use bundled libs instead
the pysam package includes the necessary libs to link to, so it wasn't even using linked libs when building
* fixed style
* revert to using external htslib
currently uses bundled samtools and bcftools, and there is no way to use external versions for those dependencies
* added libs property to htslibs package
added support for lib64
* added htslib name
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* onednn: add variant to use Arm Compute Library on aarch64
* Update cmake version
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Shorten macro definition
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update cpu/gpu_runtime variants
* Update acl variant when 1.7+
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* [@spackbot] updating style on behalf of annop-w
* Add dependencies for new runtimes
* Fix dependency package name to oneapi-level-zero
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Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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* py-awkward: new version 1.10.*, 2.0.*
Lots of changes in 2.0.*, see https://github.com/scikit-hep/awkward/releases. This will need some extra testing.
* py-awkward: hatchling
* Update var/spack/repos/builtin/packages/py-awkward/package.py
* Update var/spack/repos/builtin/packages/py-awkward/package.py
* py-scikit-build-core: new and improved py-scikit-build
* py-awkward-cpp: new package
* py-awkward: add depends_on py-awkward-cpp
* py-awkward: depends_on py-packaging
* py-awkward-cpp: new versions pinned by py-awkward
* py-scikit-build-core: additional depends_on
* py-awkward: branch master deprecated
* py-pytest-subprocess: new package
* py-pytest: new version 7.2.1
* py-scikit-build-core: add tests dependencies
* [@spackbot] updating style on behalf of wdconinc
* py-scikit-build-core: two more test dependencies
* py-pytest: depends_on py-exceptiongroup
* py-awkward: add pytest support
* py-pytest: suggestions from review
* py-scikit-build-core: suggestions from review
* Update var/spack/repos/builtin/packages/py-awkward-cpp/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* py-awkward: depends_on pyyaml when @:1, order old deps last
* [@spackbot] updating style on behalf of wdconinc
* py-awkward: move some opt deps to test, order test deps
* py-awkward: remove test dependencies
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Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
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Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
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The patches don't have a stable checksum.
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* celeritas: new versions 0.1.5 and 0.2.1
* celeritas: deprecate old versions
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Signed-off-by: Howard Pritchard <howardp@lanl.gov>
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if dump file existed it was not truncating the file, resulting in
a file with unaltered filesize, with the new content at the beginning,
"padded" with the tail of the old content, since the new content was
not enough to overwrite it.
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Update `warpx` & `py-warpx` to the latest release.
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`colify` is an old module in Spack that still uses `**kwargs` liberally.
We should be more explicit. Doing this eliminates the need for many
checks (can't pass the wrong arg if it isn't allowed) and makes the
function documentation more clear.
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Fixes a bug introduced in 44ed0de8c077630148c213d3c7f40a8965eb6f94
where the push method of binary_distribution now takes named args
include_root and include_depedencies, to avoid the **kwarg hole.
But the call site wasn't update and we passed a dict of keys/values instead
of arguments, which resulted in a call like this:
```
push(include_root={"include_root": True, "include_dependencies": False})
```
This commit fixes that, and adds a test to see if we push the correct packages.
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Additional functionality, per https://collier.hepforge.org/releasehist.html. No mention of build changes.
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* py-mpi4jax: add new package
* [@spackbot] updating style on behalf of adamjstewart
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Co-authored-by: adamjstewart <adamjstewart@users.noreply.github.com>
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* Add CCE support to hipfort
* Update package.py
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This error shows up a lot, typically it's harmless because an error
happened before the source build even started, in which case we don't
have build logs to copy. So, warn instead of error, cause it distracts
from the actual CI error.
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