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2020-03-10Ignore Eclipse files and folders (#15413)Tim Haines1-0/+5
2020-03-10openmpi: add version 4.0.3 (#15414)Howard Pritchard1-2/+3
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2020-03-09Revert to gzip as the default buildcache compression as bzip2 is not always ↵Patrick Gartung1-6/+6
available. (#15412) * Revert to gzip as the default buildcache compression as bzip2 is not always available. * Flake8
2020-03-09added cmake_args (#15411)ktsai71-1/+2
2020-03-09Gromacs: new version 2020.1 (#15399)TZ1-0/+1
2020-03-09exiv2: add zlib and expat dependency. (#15396)Toyohisa Kameyama1-0/+3
2020-03-09fast-global-file-status: add openssl dependency. (#15398)Toyohisa Kameyama1-0/+1
2020-03-09eigen variants have been removed (#15392)Stephen McDowell2-6/+2
* eigen variants have been removed ref: https://github.com/spack/spack/pull/15357 * opencv ^eigen is ('build', 'run') dependency
2020-03-07bugfix: installer.py shouldn't be executable (#15386)Todd Gamblin1-0/+0
This is a minor permission fix on the new installer.py introduced in #13100.
2020-03-07gnupg: add 2.2.19, add missing pinentry dep (#15390)Adam J. Stewart1-12/+23
2020-03-07libgcrypt: fix macOS tests (#15389)Adam J. Stewart1-7/+18
2020-03-07libgpg-error: add 1.37 (#15388)Adam J. Stewart1-6/+14
2020-03-07pinentry: add new package (#15387)Adam J. Stewart1-0/+47
2020-03-07new package: GunRock (#15383)Sinan1-0/+31
* new package: GunRock * Update var/spack/repos/builtin/packages/gunrock/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * improve Co-authored-by: Sinan81 <sbulut@3vgeomatics.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Sinan81 <Sinan81@github>
2020-03-07ArchSpec: fix semantics of satisfies when not concrete and strict is true ↵Massimiliano Culpo2-0/+17
(#15319)
2020-03-07Only use stable versions for public mirror (#15100)Peter Scheibel11-33/+93
* add --skip-unstable-versions option to 'spack mirror create' which skips sources/resource for packages if their version is not stable (i.e. if they are the head of a git branch rather than a fixed commit) * '--skip-unstable-versions' should skip all VCS sources/resources, not just those which are not cachable
2020-03-06sirius: add versions 6.4.4, 6.5.0 (#15374)Simon Pintarelli1-1/+3
- new versions 6.4.4, 6.5.0
2020-03-06Fix for being able to 'spack load' packages that have been renamed. (#14348)Andrew W Elble2-1/+36
* Fix for being able to 'spack load' packages that have been renamed. * tests: add test for 'spack load' of a installed, but renamed/deleted package
2020-03-06New package: bat (#15345)George Hartzell1-0/+29
* New package: bat Add package for bat: A cat(1) clone with wings. * Update copyright date * Embiggen comment re build env settings Provide a bit more explanatory text about why setup_build_environment needs to set LLVM_CONFIG_PATH and LIBCLANG_PATH. Co-authored-by: George Hartzell <ghartzell@audentestx.com>
2020-03-06flatbuffers: Allow building shared libraries (#15375)Dr. Christian Tacke1-0/+13
Added a shared variant, that switches between shared and static library building, like with most cmake packages.
2020-03-06Add extra version of py-widgetsnbextension (#15372)iarspider1-0/+1
2020-03-06New package: gengetopt, tool for C command line parsers. (#15367)Robert Blake1-0/+36
* New package: gengetopt, tool for C command line parsers. * Adding url for `spack version` and `spack checksum`
2020-03-06eigen: updated url to point to gitlab (#15357)Massimiliano Culpo2-60/+22
* eigen: updated url to point to gitlab fixes #13890 Eigen migrated from bitbucket to gitlab * eigen: simplified package (no dependencies other than stdlib) * Added TODO list for future improvements
2020-03-06libunwind: remove version 2018.10.12, add stable branch (#15316)Mark W. Krentel2-7/+20
* libunwind: remove version 2018.10.12, add stable branch Finish cleaning up the libunwind version numbers. The 2018.10.12 snapshot number didn't fit well with spack's ordering (my bad), and 1.4-rc1 is a near identical replacement. Add a version for the 1.4-stable branch. Add a variant for zlib compressed symbol tables (develop branch only). Adjust packages caliper and hpctoolkit to adapt to the changes. Add myself as maintainer. * Flake * Settle on renaming 'develop' to 'master' (to match the branch name) and name the 'v1.4-stable' branch as '1.4-head'. 'stable' or '1.4-stable' is a better name, but '1.4-head' (an infinity version) sorts better.
2020-03-06Cscope: fix linking and update to v15.9 (#15358)Mathias Anselmann1-2/+10
* explicitly link against libtinfo * Update to v15.9 * fixed indentation * fixed url definition * added url vor current version again * fixed indentation * moving url_version to the bottom
2020-03-06munge: new version, local state path, misc (#15307)Dr. Christian Tacke1-1/+15
* Add version 0.5.14 * Add variant to allow setting the localstatedir: See below * Add bzip2 dependency * Add myself to maintainers (I just think, I can care for this package) About localstatedir: munge has a server and a client. They communicate via unix domain sockets. This socket is in PREFIX/var. This package provides the client, the server, and development part (headers, libraries). Let's assume one has the server part installed as a system package. This generally is a good idea, so that the server gets started during boot. This means, that the socket is in the system's /var. If one now wants to use the client part (library!) via spack, one has a problem: spack's munge looks in SPACK-PACKAGE-PREFIX/var for the socket. There needs to be a way to let the spack installed package use the system's socket. So add a variant to override the path during build: localstatedir=/var.
2020-03-06Update pycairo to 1.18.1 and fix dependencies (#15352)iarspider1-3/+5
* Update pycairo to 1.18.1 and fix dependencies * Typo
2020-03-06openPMD-api: 0.11.0 (#15371)Axel Huebl1-0/+1
Add the latest release of openPMD-api.
2020-03-05Allow overrides for spack.config set() and override(). (#14432)Chris Green2-17/+141
Allows spack.config InternalConfigScope and Configuration.set() to handle keys with trailing ':' to indicate replacement vs merge behavior with respect to lower priority scopes. Lists may now be replaced rather than merged (this behavior was previously only available for dictionaries). This commit adds tests for the new behavior.
2020-03-05Recover coverage from subprocesses during unit tests (#15354)Tamara Dahlgren5-16/+16
* Recover coverage from subprocesses during unit tests
2020-03-05Add Checksum for 1.4.1.4 Release (#15363)Adam J. Stewart1-0/+4
* Add Checksum for 1.4.1.4 Release Add checksum for 1.4.1.4 release. Mark myself as maintainer. List develop version. * Update var/spack/repos/builtin/packages/libhio/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Update package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-03-05Python: add 3.8.2 (#15365)Adam J. Stewart1-0/+1
2020-03-05Update legion versions (#15364)Adam J. Stewart1-5/+3
2020-03-05unifyfs: add patch to fix #15292 (#15315)eugeneswalker2-1/+30
It was reported that UnifyFS had a bug with the --enable-mpi-mount config option, which corresponds to the auto-mount variant. This bug was fixed in the UnifyFS dev branch, however remains broken for the 0.9.0 version. This adds a patch to the unifyfs package to fix the auto-mount variant when installing with version 0.9.0. This also removes the openssl dependency as unifyfs does not directly depend on it. This was said to be a non-explicit dependency in #15258. However, if it is needed, it is likely a non-explicit dependency of one of unifyfs's dependencies and should be added there. Fixes: #15292
2020-03-05lammps: add most recent stable release (#15335)Adam J. Stewart1-1/+10
* lammps: add most recent stable release * Update var/spack/repos/builtin/packages/lammps/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-03-05Allow buildcaches keys to find public keys on the e4s mirror (#15361)Patrick Gartung1-3/+6
2020-03-05lastz: declare ch as type int (#15350)Adam J. Stewart3-72/+247
2020-03-05update maintainers for bmi, darshan, and margo (#15356)Adam J. Stewart4-1/+7
Signed-off-by: Phil Carns <carns@mcs.anl.gov>
2020-03-05New package: fd-find (#15344)Axel Huebl1-0/+21
* New package: fd-find Add package for fd-find: A simple, fast and user-friendly alternative to 'find'. * Update copyright date
2020-03-05New package: ripgrep (#15343)Axel Huebl1-0/+31
Add package for ripgrep: ripgrep is a line-oriented search tool that recursively searches your current directory for a regex pattern. ripgrep is similar to other popular search tools like The Silver Searcher, ack and grep.
2020-03-05New package: opensubdiv (#15310)Adam J. Stewart1-0/+85
* [opensubdiv] created stub for opensubdiv * [opensubdiv] added homepage and description * [opensubdiv] removed boilerplate * [opensubdiv] working on dependencies and variants * [opensubdiv] fixed syntax error * [opensubdiv] defined spec * [opensubdiv] added dev version * [opensubdiv] building on CudaPackage * [opensubdiv] always build with open gl and depends_on('gl') * [opensubdiv] applying cuda flags * [opensubdiv] worked on doc variant * [opensubdiv] added some x11 libraries * [opensubdiv] depends on glfw * [opensubdiv] locating glew * [opensubdiv] added openmp variant * [opensubdiv] flake8 fixing * [opensubdiv] fixed develop version name * [opensubdiv] fixed description to not need @
2020-03-05Correct pytest.raises matches to match (#15346)Massimiliano Culpo3-10/+10
2020-03-05Bugfix: resolve StopIteration message attribute failure (#15341)Massimiliano Culpo2-1/+22
Testing the install StopIteration exception resulted in an attribute error: AttributeError: 'StopIteration' object has no attribute 'message' This PR adds a unit test and resolves that error.
2020-03-04py-matplotlib: add 3.2.0 (#15349)Adam J. Stewart1-6/+6
2020-03-04xgboost: add version 0.90 (#15321)Peter Scheibel1-0/+2
2020-03-04New version of simplejson (#15325)Axel Huebl1-0/+1
2020-03-04ADIOS2: Cleanup, Development Branch Name (#15334)Adam J. Stewart1-4/+4
* ADIOS2: Version `master` Rename branch version to supported, real development branch `master`. The old name is legacy Spack when alternative development branch names were not yet supported. * ADIOS: Simplify via spec Variable use the already defined local variable `spec` to shorten lines
2020-03-04ADIOS2: Testing Depends on Python (#15336)Adam J. Stewart1-3/+9
Add the python dependency and CMake hints when build with tests. `spack install --tests=root adios2`
2020-03-04Add function replace_prefix_nullterm for use on mach-o rpaths. (#15347)Patrick Gartung1-4/+35
This recovers the old behavior of replace_prefix_bin that was modified to work with elf binaries by prefixing os.sep to new prefix until length is the same as old prefix.
2020-03-04Fixed the sha has for 1.3.3. (#15331)Adam J. Stewart1-1/+1
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