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2023-06-26Add raw attribute to env.set command (#38465)Xavier Delaruelle5-9/+58
Update `env.set` command and underlying `SetEnv` object to add the `raw` boolean attribute. `raw` is optional and set to False by default. When set to True, value format is skipped for object when generating environment modifications. With this change it is now possible to define environment variable whose value contains variable reference syntax (like `{foo}` or `{}`) that should be set as-is. Fixes #29578
2023-06-26acts: ensure Python_EXECUTABLE uses ^python when +python (#38540)Wouter Deconinck1-0/+4
By default, `find_package(Python)` searches from highest version to lowest version, identifying the highest version that satisfies the requirements. This means that `/usr/bin/python3.11` will be found before `$(spack location -i python)/bin/python3.10`, even when other packages have been built with the `python` in spack. This ensures that the `python` dependency is explicitly the `python` version that is used.
2023-06-26py-scipy: add v1.11.0 (#38546)Adam J. Stewart3-10/+25
Co-authored-by: adamjstewart <adamjstewart@users.noreply.github.com>
2023-06-26MOLGW: add new package (#37878)Fabien Bruneval1-0/+112
2023-06-26bzip2: add pkg-config file (#38355)is-a-gamer1-0/+19
Co-authored-by: HongZhi He <a13041902330@outlook.com>
2023-06-25libxml2: convert to new stand-alone test process (#37694)Tamara Dahlgren1-35/+82
2023-06-24ascent: add optional occa dep (#38426)Cyrus Harrison1-0/+13
Co-authored-by: cyrush <cyrush@users.noreply.github.com>
2023-06-24gmap-gsnap: updating to 2023-06-01 (#38428)George Young1-0/+6
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-06-24circe2: add new package (#38491)Thomas Madlener1-0/+42
2023-06-24apptainer: add squashfuse dep (#38499)snehring1-0/+1
2023-06-24etsf-io: convert to new stand-alone test process (#35746)Tamara Dahlgren1-19/+6
2023-06-24gaudi: new versions 36.[11-14] (#38498)Wouter Deconinck1-0/+4
2023-06-24hpctoolkit: convert to new stand-alone test process (#35752)Tamara Dahlgren1-15/+20
2023-06-24clp and osi depend on pkgconfig (#31505)miheer vaidya2-0/+2
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com> Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2023-06-24GSI-ncdiag: add v1.1.0 and v1.1.1. (#38196)David Huber1-1/+3
Co-authored-by: [David Huber] <[david.huber@noaa.gov]>
2023-06-24Fix syntax to set default target in aws-pcluster pipelines (#38048)Stephen Sachs5-5/+5
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-06-24libzmq: Fix static assertion failure with gcc-13 (#38391)Dennis Klein1-0/+9
2023-06-24pfunit: fix the max_array_rank variant definition (#38528)Matthew Thompson1-2/+2
2023-06-24DMTCP: add v3.0.0. (#38307)Kapil Arya1-1/+3
2023-06-24lammps: new verisons (#38532)Richard Berger1-4/+6
2023-06-24Fixes openmpi configure args for multinode execution on slurm (#38403)Gurkirat Singh1-5/+15
Remove `--enable-mca-no-build=btl-uct` check for ucx spec as it is already fixed in the openmpi open-mpi/ompi#6666
2023-06-24range-v3: remove overbroad boost dependence (#38539)Chris Green1-8/+10
Co-authored-by: greenc-FNAL <greenc-FNAL@users.noreply.github.com>
2023-06-23libEnsemble: add v0.10.0 (#37954)Stephen Hudson1-4/+6
* libEnsemble: add v0.10.0 * Make new deps required * Fixes to deps * Update var/spack/repos/builtin/packages/py-libensemble/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Fix build, run * Reorder required deps --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-06-23py-pytest: add 7.3.2 (#38522)Manuela Kuhn1-8/+8
* py-pytest: add 7.3.2 * [@spackbot] updating style on behalf of manuelakuhn * Swap py-importlib-metadata dependency order * Restrict python version for older versions
2023-06-23Add recipe for iterative-stats (#38039)mschouler1-0/+35
* Add recipe for iterative-stats * Fix branch name and remove comment * Add git link * Add package maintainer * Enforce multiple requested changes * Update var/spack/repos/builtin/packages/py-iterative-stats/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update checksum * Fix openturns dependency specification * Add python variant spec to openturns --------- Co-authored-by: Marc Schouler <marc.schouler@inria.fr> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-06-23Added version 0.33 (#38534)julian-zeidler1-0/+1
2023-06-23fix version dependency logic (#38535)G-Ragghianti1-1/+1
2023-06-23zlib-ng: add latest, default to drop in replacement of zlib (#37370)Harmen Stoppels1-6/+25
2023-06-23Add numa variant in ucx package (#38423)Gurkirat Singh1-1/+3
2023-06-23spack buildcache sync (--manifest-glob <glob> | <src> <dest>) are mutually ↵Harmen Stoppels1-3/+6
exclusive (#38533)
2023-06-22py-pytz: add 2023.3 (#38525)Manuela Kuhn1-0/+2
2023-06-22py-qmtest: add patch for the removed bdist_wininst class (#38253)Juan Miguel Carceller2-0/+23
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2023-06-22py-python-gitlab: add 3.15.0 (#38524)Manuela Kuhn2-6/+13
2023-06-22Add 1606 (#38511)Paul R. C. Kent1-0/+1
2023-06-22Emblmygff3 (#38515)snehring2-0/+29
* py-bcbio-gff: adding new version 0.7.0 * emblmygff3: adding new package * emblmygff3: adding py-setuptools dep
2023-06-22rust: Add v1.70.0 and simplify package bootstrap (#38311)Alec Scott2-359/+209
* Add rust v1.70.0 and simplify package logic by moving bootstrap to dedicated package * Fix formatting of rust-bootstrap package file * Re-enable Rust as extendable * Add nightly version to rust and rust-bootstrap * Manually inject openssl certs into environment * Add master and beta versions to rust * Add additional documentation for using rust development releases * Remove @AndrewGaspar as maintainer
2023-06-22py-packaging: add 23.1 (#38417)Manuela Kuhn1-0/+1
2023-06-22VASP package: Zen4 Support (#36800)AMD Toolchain Support1-19/+89
* zen4 support for vasp * encourage openmp support in fftw/blas when +openmp * enable gamma and non-collinear builds
2023-06-22freefem: add missing dependencies (#38290)Michael Kuhn1-4/+12
Also remove the custom `autoreconf` method as it does not seem to be necessary and potentially hides useful output provided by the default.
2023-06-22py-notebook: add 6.5.4 (#38415)Manuela Kuhn1-26/+27
* py-notebook: add 6.5.4 * [@spackbot] updating style on behalf of manuelakuhn * Update var/spack/repos/builtin/packages/py-notebook/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Fix version of py-nbclassic dependency --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-06-22Add LFortran (#30901)Ondřej Čertík1-0/+41
It installs the LFortran runtime library and LFortran can compile codes to binaries. The interactive mode does not work yet with LLVM > 11, that has to be fixed upstream. Co-authored-by: Wileam Y. Phan <50928756+wyphan@users.noreply.github.com>
2023-06-22py-numexpr: add 2.8.4 (#38416)Manuela Kuhn1-5/+7
2023-06-22open turns: Add libxml2 dependency and increase version to v1.20 (#38038)mschouler1-1/+5
* Add libxml2 dependency and increase version to v1.20 * Update var/spack/repos/builtin/packages/openturns/package.py Co-authored-by: Alec Scott <alec@bcs.sh> * Add v19 * Add libxml2 variant * Fix variant specification --------- Co-authored-by: Marc Schouler <marc.schouler@inria.fr> Co-authored-by: Alec Scott <alec@bcs.sh>
2023-06-22py-platformdirs: add 3.5.3 (#38435)Manuela Kuhn2-1/+6
* py-platformdirs: add 3.5.3 * py-typing-extensions: add 4.6.3
2023-06-22py-prompt-toolkit: add 3.0.38 (#38472)Manuela Kuhn1-25/+10
2023-06-22py-patsy: add 0.5.3 (#38433)Manuela Kuhn1-2/+5
2023-06-22qt: new version 5.15.10 (#38489)Wouter Deconinck1-0/+1
No changes to the build system, no changes to `package.py` needed. Changelog: https://github.com/qt/qtbase/compare/v5.15.9-lts-lgpl...v5.15.10-lts-lgpl Main change taking up space: - bundled 3rdparty/pcre2 updated from 10.39 to 10.40 (spack now includes 10.42, and we don't put specific version requirements in `package.py`)
2023-06-22hpx: Add conflict with some GCC versions and `+rocm` due to `valarray` bug ↵Mikael Simberg1-0/+8
(#38297) * hpx: Add conflict with some GCC versions and +rocm due to valarray bug https://gcc.gnu.org/bugzilla/show_bug.cgi?id=103022 * remove conflict for %gcc@11.1.0 since there is none --------- Co-authored-by: eugeneswalker <eugenesunsetwalker@gmail.com>
2023-06-22py-pyproj: add v3.6.0 (#38399)Adam J. Stewart1-2/+2
2023-06-22py-networkx: add 3.1 (#38377)Manuela Kuhn1-19/+35
* py-networkx: add 3.1 * Update var/spack/repos/builtin/packages/py-networkx/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Add default variant --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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