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2017-02-28Update Adol-C to AutotoolsPackage; Change develop repository (#3246)Jean-Paul Pelteret1-23/+34
The new repository for the development version points to the most up-to-date official source for Adol-C. The previous SVN repository was only occasionally sync'd with this repository.
2017-02-28nfft distclean before configure patch (#3241)Thierry1-0/+3
2017-02-28add package py-sh (#3266)healther1-0/+37
* add package py-sh * removed constraint on py-setuptools
2017-02-28Fix infinite recursion in swig build (#3249)Adam J. Stewart1-4/+7
2017-02-28add sz package (#3251)Bryce Allen1-0/+48
2017-02-28add package py-saga-python and dependencies (#3267)healther4-0/+149
* add package py-saga-python and dependencies * fixed url and dependencies
2017-02-28add package py-attrs (#3253)healther1-0/+36
2017-02-28add py-ranger package (#3258)healther1-0/+37
2017-02-28add package py-xarray (#3259)healther1-0/+38
2017-02-28add version 0.29.0 to py-wheel (#3261)healther1-0/+1
2017-02-26numdiff: add 5.9.0 (#3243)Denis Davydov1-0/+1
2017-02-24Add py-mock version 2.0.0 (#3234)Eric Müller1-0/+1
2017-02-24Add bazel version 0.4.4 (#3233)Eric Müller1-0/+2
2017-02-23Fixing graphviz issue when calling spec (#3225)Javier1-0/+1
2017-02-22fix py-setuptools (#3217)Denis Davydov1-1/+3
2017-02-22Add SCOREC Core package for unstructured mesh simulations. (#3202)Pramod Kumbhar1-0/+59
* Add SCOREC Core package for unstructured mesh simulations.
2017-02-22Fix scotch build on bg-q (#3196)Pramod Kumbhar1-0/+9
* Fix build issue #3190 on bg-q : - disable parallel build as it produces weired linker errors in cross compiling environment - update ldflags for bg-q as per Makefile provided Makefile.inc.ppca2_ibm_bgq * Added note about -lpthread vs -pthread
2017-02-22Updating homepages and sources from two BSC packages (#3216)Kim Serradell2-6/+7
* Corrected extrae package homepage and url * Corrected paraver package homepage and url * To fix 'undefined reference to libintl_dgettext' appearing in extrae package when using binutils+libiberty * Adding support to previous paraver version and reverting binutils changes to open another PR
2017-02-22Convert Jaspert to AutotoolsPackage (#3212)Todd Gamblin1-12/+7
2017-02-21Boost modification for IBM xl compiler (#3205)eklee152-1/+794
Tested with: spack install boost@1.62.0+iostreams%xl_r^zlib%gcc^bzip2%gcc
2017-02-21Add packages: mosh (#3098)healther1-0/+45
* Add packages: mosh Perl is a run dependency. See https://github.com/mobile-shell/mosh/wiki/Build-Instructions
2017-02-21Fixing issue wheh overwriting build_args in PythonPackage (#3200)Javier1-1/+1
2017-02-21Fix malformed py-appdirs patch (#3203)Javier1-2/+2
2017-02-20Default to OpenSSL 1.0 (#3100)healther1-6/+5
* Added version 1.1 to openssl * restore note explaining preferred=True for 1.0.2k
2017-02-20parallel-netcdf: use spack_cc for sequential code instead of system gcc (#3143)Carlos Bederián1-0/+1
2017-02-20Fix setuptools bootstrapping now that dependencies are no longer vendored ↵Adam J. Stewart7-4/+154
(#3198) * Fix setuptools bootstrapping now that dependencies are no longer vendored * Reorder patch and comments * Use exact same patch as https://github.com/ActiveState/appdirs/pull/84 * Use exact same patch as https://sourceforge.net/p/pyparsing/patches/10/
2017-02-20Updating package: geant4 (#3197)Javier2-31/+113
2017-02-20Add MATLAB package (#2614)Adam J. Stewart1-0/+81
* Add MATLAB package * Remove auto-accept license feature
2017-02-20Fix tab completion of directories and filenames (#3184)Adam J. Stewart1-35/+11
2017-02-20Add installer for petsc4py and slepc4py (#3187)Barry Smith2-0/+76
* Add installer for petsc4py and slepc4py * @adamjstewart requested changes on this pull request; make these type=('build', 'run') * @citibeth suggestion Remove unneeded indirect dependencies
2017-02-20Update CUDA docstring, no longer need to download manually (#3191)Adam J. Stewart1-14/+2
* Update CUDA docstring, no longer need to download manually
2017-02-20openblas: add develop version to make it work with Kabylake CPUs (#3192)Denis Davydov2-1/+3
* openblas: add develop version to make it work with Kabylake CPUs * dealii: fix develop branch
2017-02-20Fix zoltan installation issue on bg-q #3193 (#3194)Pramod Kumbhar1-2/+11
Zoltan expects mpi libraries with option --with-mpi-libs. If this option is not provided then it uses '-lmpi' which may not be correct. To avoid this, we have to explicitly pass empty string. This adds notes to the source explaining the change.
2017-02-20Add new versions of several Python packages (#3195)Adam J. Stewart7-24/+84
2017-02-20add symlink variant (needed for AFS) (#3147)healther1-1/+7
* add symlink variant (needed for AFS) * fix flake8 * added missing return statement
2017-02-20Added version 1.49.2 to gobject-introspection (#3090)healther1-2/+4
2017-02-19silo: adding patch to support newer versions of hdf5 (#3162)Carlos Bederián2-2/+43
2017-02-19Add installer for SAWs (#3186)Barry Smith1-0/+36
2017-02-18Add Intel Parallel Studio XE 2016u4 and 2015u6. (#3182)健美猫1-0/+4
2017-02-18Add patches to allow PGI to build Tar properly (#3177)Adam J. Stewart6-5/+178
2017-02-18Replace GCC-specific warning flags with valid PGI flags (#3137)Adam J. Stewart1-0/+6
2017-02-18Add patch to allow M4 `make check` to pass for PGI (#3108)Adam J. Stewart2-1/+197
2017-02-18octave: fix missing --without statements (#3178)Denis Davydov1-1/+6
2017-02-18Add package: log4cxx (#3097)healther3-0/+202
* Add log4cxx package * add missing patch files to log4cxx * remove unnecessary dependencies * this fails at 'make check' * this is the AutotoolsPackage version * fixed install bug
2017-02-18Added 2017 Intel libraries (#3084)healther1-0/+2
2017-02-18Add binutils variant +plugins (#3083)healther1-0/+5
* Add binutils variant +plugins * added description to plugins variant
2017-02-18Fix for qt3 specific qt build (#3063)Jim Galarowicz1-2/+8
* Update the krell institute products to use the latest features of spack for building on cluster platforms. * Address travis error messages and resubmit the pull request. * Update the contents of openspeedshop package.py so it passes the flake8 tests. * Fix flake8 error-whitespack issue in mrnet package.py file. * Add updates based on spack reviewer feedback. * More fixes based on comments from reviewers. Switch using extend to using append, remove additional setting of PATH and LD_LIBRARY_PATH that should not be required due to RPATH. * More review related changes. Update MPIOption.append lines and take out xercesc references. * Create a base options function for common openspeedshop base cmake options to reduce redundencies. * Add libxml2+python depends on to get around issues with the libxml2 package file. * Using boost over 1.60.0 causes compile errors. This is a known boost bug. Also, dyninst-9.2.0 is set to be the vesrion of dyninst to use with OSS, as of now. The newer version fails to build. * Fix bad syntax in specifying the boost version range. * Update the version numbers for the krell institute components and tools: cbtf and openspeedshop. * Do not build glib for qt3, it is not needed and causes build problems at this time anyway. * A fix was added for setting LD_LIBRARY_PATH in the qt3 build, but if LD_LIBRARY_PATH is not set the qt build fails. So so check and set LD_LIBRARY_PATH if not set, update if it is set. * Update the fix for qt3 build by setting LD_LIBRARY_PATH instead of checking for whether it is set or not per Adams comment that spack clears LD_LIBRARY_PATH. * A fix was added for setting LD_LIBRARY_PATH in the qt3 build, but if LD_LIBRARY_PATH is not set the qt build fails. So so check and set LD_LIBRARY_PATH if not set, update if it is set. * Trim comments to fit more concisely. * Fix tabs versus spaces and swap if and else clause check from a negative to a positive check.
2017-02-18Added shmem variant to Score-p build (#3024)sknigh1-0/+3
* Disable by default to fix builds on Centos 7
2017-02-18Bug fix: PDT configure uses -prefix, not --prefix (#2976)Pramod Kumbhar1-0/+3
* This bug was introduced in #2845.
2017-02-18Fix tab completion after change to uninstall flag (#3175)Adam J. Stewart1-1/+1
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