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2016-01-25Merge pull request #1 from alalazo/features/external-packagesMatthew LeGendre1-2/+2
doc : minor typos fixed
2016-01-25Merge branch 'develop' into features/external-packagesMatthew LeGendre642-2884/+29977
Conflicts: lib/spack/spack/cmd/mirror.py lib/spack/spack/concretize.py lib/spack/spack/config.py lib/spack/spack/spec.py lib/spack/spack/stage.py var/spack/packages/mvapich2/package.py
2016-01-21Merge pull request #389 from eschnett/eschnett/openmpi-updateTodd Gamblin1-1/+2
Update OpenMPI to 1.10.2
2016-01-21Disable patch that was merged into upstream in 1.10.2Erik Schnetter1-1/+1
2016-01-21Update OpenMPI to 1.10.2Erik Schnetter1-0/+1
2016-01-21Merge pull request #383 from LLNL/features/better-executable-argsTodd Gamblin11-60/+116
Refactor args for Executable.__call__
2016-01-21Refactor args for Executable.__call__Todd Gamblin11-60/+116
- simplify output, error, and input redirection - `return_output=True` is now `output=str` - `return_output=True` will still work for the time being but is deprecated. - previously you could say `return_output=True` and `output=<stream>`, which wouldn't actually write to the stream. Now you actually can't specify erroneous cases since there is only one parameter with mutually exclusive options..
2016-01-21Merge pull request #384 from epfl-scitas/packages/elpaTodd Gamblin1-0/+55
added package : elpa
2016-01-21Merge pull request #386 from adamjstewart/features/mpfrTodd Gamblin1-1/+1
Remove constraint on dependency version
2016-01-21Remove constraint on dependency versionAdam J. Stewart1-1/+1
2016-01-21Merge branch 'develop' of https://github.com/LLNL/spack into packages/elpaalalazo1-10/+24
2016-01-21Merge pull request #376 from adamjstewart/features/mvapich2Todd Gamblin1-10/+24
Various updates to MVAPICH2 package
2016-01-21Merge pull request #380 from epfl-scitas/packages/mumpsTodd Gamblin3-0/+227
Adding packages MUMPS and ScaLAPACK
2016-01-21elpa : added missing dependenciesalalazo1-1/+10
2016-01-21Merge remote-tracking branch 'scitas/packages/mumps' into packages/elpaalalazo3-0/+227
2016-01-21Merge branch 'develop' into packages/elpaalalazo8-34/+119
2016-01-20Merge pull request #350 from adamjstewart/features/nagTodd Gamblin5-4/+39
Add NAG Fortran Compiler support
2016-01-20Merge pull request #381 from adamjstewart/features/locationTodd Gamblin1-1/+1
Fixed typo when running spack help
2016-01-20Fixed typo when running spack helpAdam J. Stewart1-1/+1
2016-01-20Redirect STDERR to STDOUT for compiler versionAdam J. Stewart1-1/+2
This is necessary for the NAG Fortran compiler, which prints its version message to STDERR instead of STDOUT. This message was previously being ignored, preventing spack from finding the compiler's version or automatically adding it to the compilers.yaml configuration file.
2016-01-20Merge pull request #379 from epfl-scitas/packages/hdf5Todd Gamblin2-29/+79
HDF5 + OpenMPI : modified existing packages
2016-01-20Minor correction to install mumps+mpiNicolas Richart3-15/+37
2016-01-20openmpi : turned torque support into a variant (default false)alalazo2-29/+79
hdf5 : fixed a few bugs, removed suspicious macro deinition, etc.
2016-01-20renaming packages to follow changes on developNicolas Richart3-0/+0
2016-01-20Adding MUMPS and ScaLAPACKNicolas Richart3-0/+205
2016-01-20fixed two minor typosalalazo1-2/+2
2016-01-20elpa : commit partial package. Blocked by missing scalapackalalazo1-0/+46
2016-01-19Merge pull request #377 from mathstuf/fix-typosTodd Gamblin2-2/+2
typos: fix some letter transposes
2016-01-19typos: fix some letter transposesBen Boeckel2-2/+2
2016-01-19Modify nag.py to match new compiler package structureAdam J. Stewart1-0/+9
2016-01-19Merge branch 'develop' into features/nagAdam J. Stewart2-0/+76
* develop: eigen : added package Revert deprecated configure flags Add verbs variant, remove deprecated configure flags
2016-01-19Add symlink for NAG Fortran CompilerAdam J. Stewart1-0/+1
2016-01-19Various updates to MVAPICH2 packageAdam J. Stewart1-10/+24
Use url_for_version function to specify urls Add version 2.2b Add dedicated MRAIL variant Fix typo Make fortran compiler flags more specific
2016-01-19Merge pull request #373 from adamjstewart/features/mpichTodd Gamblin1-0/+8
Add verbs variant, remove deprecated configure flags
2016-01-19Merge pull request #374 from epfl-scitas/packages/eigen_no_suitesparseTodd Gamblin1-0/+68
eigen : added package
2016-01-19eigen : added packagealalazo1-0/+68
2016-01-19Merge branch 'develop' into features/nagAdam J. Stewart502-1149/+21297
* develop: (77 commits) Make libxcb compile with gcc 4.9. disable parallel install for glib (found races) disable cairo-trace, which is incompatible with older libiberty.h. Fix LaunchMon on newer gcc versions. Simplify output redirection in spack.util.executable Allow completely empty config files. Update cmake package to use http in all URLs. Fix create, diy, edit, and repo commands to use multiple repos. Add namespace option to find command. Temporary fix: Clang is the default compiler on Mac OS X. Netcdf requires cmake >=2.8.12 Mbedtls depends on cmake Update libtool to 2.4.6 Update Julia to 0.4.3 Make binutils build on OS X Add verbs and psm variants py-matplotlib: depend on freetype py-numpy: make blas/lapack optional dependencies qhull: apply patch to work with libc++'s standard library New package GNU tar ...
2016-01-19Revert deprecated configure flagsAdam J. Stewart1-2/+2
2016-01-19Merge branch 'develop' into features/mpichAdam J. Stewart447-880/+6952
* develop: (43 commits) Make libxcb compile with gcc 4.9. disable parallel install for glib (found races) disable cairo-trace, which is incompatible with older libiberty.h. Fix LaunchMon on newer gcc versions. Simplify output redirection in spack.util.executable Allow completely empty config files. Fix create, diy, edit, and repo commands to use multiple repos. Add namespace option to find command. Temporary fix: Clang is the default compiler on Mac OS X. update compiler config test. add sanity check on config write as well as validation on read. Add jsonschema validation for config files. Make text wrapping off by default in tty, add a kwarg for it. add/remove/list working for new config format. Add Python 3 aliases to our argparse backport. All tests that call concretize() need to be MockPackagesTests. Fix bug in tests. Rework mirror configuration. Rework compiler configuration and simplify config.py logic. Remove mock_configs; tests no longer modify spack home directory. ...
2016-01-19Make libxcb compile with gcc 4.9.Todd Gamblin1-3/+7
2016-01-19disable parallel install for glib (found races)Todd Gamblin1-1/+1
2016-01-19disable cairo-trace, which is incompatible with older libiberty.h.Todd Gamblin1-0/+1
2016-01-19Fix LaunchMon on newer gcc versions.Todd Gamblin1-0/+10
2016-01-19Simplify output redirection in spack.util.executableTodd Gamblin2-16/+11
- By default inherit parent's input/output descriptor - Only use pipes if we need to return output. - Allows subprocesses (like emacsclient) to detect terminal correctly
2016-01-19Allow completely empty config files.Todd Gamblin1-3/+3
- Previous version would give validation error for an empty file. Now this is properly ignored. - Also includes bugfix in ConfigFormatError
2016-01-19Merge branch 'mplegendre-multi_pkgsrc_roots' into developTodd Gamblin445-860/+6922
- This moves var/spack/packages to var/spack/repos/builtin/packages. - Packages that did not exist in the source branch, or were changed in develop, were moved into var/spack/repos/builtin/packages as part of the integration. Conflicts: lib/spack/spack/test/unit_install.py var/spack/repos/builtin/packages/clang/package.py
2016-01-18Add verbs variant, remove deprecated configure flagsAdam J. Stewart1-2/+10
2016-01-17Merge pull request #355 from eschnett/eschnett/llvmTodd Gamblin1-3/+6
LLVM depends on cmake, and does not depend on isl
2016-01-17Merge pull request #202 from scheibelp/features/unittest-xml-output-noseTodd Gamblin56-31/+13906
Features/unittest xml output nose
2016-01-17Update cmake package to use http in all URLs.Todd Gamblin1-3/+3
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