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2018-10-10 vtk: added v8.1.1, added option to disable libharu (#9475)sknigh1-1/+10
* Added VTK 8.1.1, added option to disable libharu * Add variant description to vtk+libharu
2018-10-10Update compile flags for netlib-lapack when building with the XL compiler. ↵Serban Maerean2-1/+14
(#9318) We need to use -O3 -qstrict -qnohot. Modified ibm-xl.patch and netlib-lapack package file.
2018-10-10Added sst-core and variant for core to sst-macro. (#9380)sknigh2-3/+72
2018-10-10perl-scalar-util-numeric: new package (#9466)Levi Baber1-0/+36
2018-10-10new xdot.py package and necessary updates to GUI libs (#9179)Gregory Lee7-9/+186
* new xdot.py package and necessary updates to GUI libs * new xdot.py package and necessary updates to GUI libs
2018-10-10Fix missing dependencies and glibc build failures (#9106)Michael Kuhn10-1/+80
* bison: Add missing build dependencies bison also depends on cmp, which is currently not available in Spack. * help2man: Add missing build dependency * m4: Fix build with newer versions of glibc * openssl: Add missing build dependency openssl's configure script is actually a Perl script. * texinfo: Add missing perl dependency * diffutils: New package * findutils: Fix build with newer versions of glibc * mvapich2, mpich: Add missing findutils dependency
2018-10-10rdma-core: Fix checksum for @17.1 (#9480)Michael Kuhn1-1/+1
2018-10-09Add important variants to MOAB and Geant4 (#9409)Seth R. Johnson2-2/+14
* Add option to disable threads for Geant4 * Add option to enable DagMC in MOAB * Explicitly add OFF flag when threading is disabled * Fix unintentional enabling of C++14 in Geant4 The following always evaluated to True: 'c++14' or 'c++1y' in spec:
2018-10-09matlab: new version (#9427)Dan Han1-2/+2
2018-10-09braker: add missing deps (#9468)Levi Baber1-0/+3
2018-10-09Added nlohmann-json v3.3.0 (#9463)sknigh1-0/+1
2018-10-09sspace-standard: add perl-perl4-corelibs dep, fix perl scripts (#9473)Justin Stanley1-1/+13
perl scripts were pointing to /usr/bin/perl, changed to point to the spack-installed perl
2018-10-09Make builtin flag handlers available in package scope (#8668)Greg Becker6-40/+47
* Push default flag handlers into module scope * Preserve backwards compatibility of builtin flag handler names Ensure Spack continues to work for packages using the `Package.env_flags` idiom and equivalent. * update docs and tests to match * Update packages to match new syntax
2018-10-09xerces-c: add variant for transcoder, rework config flags. (#9393)Mark W. Krentel2-5/+56
* xerces-c: Add variant for choice of transcoder (gnuiconv, iconv, icu, macos, windows). It's important to specify a --enable-transcoder option on the configure line or else xerces may make a different choice when multiple transcoders are available. * Pass the compile flags to configure. For cflags and cxxflags, this is necessary to respect the value from the spack install line. Otherwise, xerces (and any autotools package) will choose a default value that overrides the spack compiler wrapper. * Add xerces version 3.2.2. * icu4c needs the --enable-rpath configure option on Darwin
2018-10-09blastplus: newest version 2.7.1 (#9472)Dan Han1-0/+3
2018-10-09xsdk: reorder develop version statements (#9469)Satish Balay1-12/+12
2018-10-09trilinos: extend TPetra explicit instantiations and fix missing Teuchos ↵Denis Davydov1-22/+41
counterparts (#9448)
2018-10-09New package: pythia6 (#9340)Chris Green3-0/+565
Includes optional extra code for compatibility with Root.
2018-10-09petsc: add petsc-3.10.2 (#9467)Satish Balay1-0/+1
2018-10-09Removed gtk dependency from Candle (#9451)Robert Pavel1-1/+1
After talks with candle dev, removed unsatisfiable conflict with candle-benchmark and opencv by disabling gtk in the candle spec
2018-10-09Autofact: new package (#9317)Levi Baber1-0/+55
* autofact: new package * autofact: typo * autofact: syntax * autofact: deps * autofact: perl mods path * autofact: edit->patch and script path
2018-10-09perl-perl4-corelibs: new package (#9459)Justin Stanley1-0/+42
2018-10-09New package: tldd (#9434)Ricardo Silva1-0/+47
* New package: tldd * https://gitlab.com/miscripts/tldd * Improvements * make it prefetchable by specifying a hash based version * specify the constraints on pstreams versions (from INSTALL) * Improvements * Make it a Makefile Package and only overwrite the install_targets * Remove the URL as there's really no downloadable 'tar ball' version
2018-10-09energyplus: new package starting at 8.9.0 (#9262)Justin Stanley1-0/+57
* energyplus: new package starting at 8.9.0 * energyplus: fix misleading comment * energyplus: remove redundant version url
2018-10-09STRUMPACK: new package (#9429)Pieter Ghysels1-0/+129
* Initial commit for new package STRUMPACK, a linear solver library. * Update to STRUMPACK version 3.0.3. This adds a check for OpenMP task priority support (since OpenMP 4.5)
2018-10-09r-proto: added 1.0.0 (#9456)Justin Stanley1-0/+1
* r-proto: added 1.0.0 * r-proto: reorder versions
2018-10-08ant: add tested 1.10.0, switch build target (#9358)Justin Stanley1-3/+2
2018-10-08treesub: new package starting at 0.2 (#9361)Justin Stanley2-0/+63
* treesub: new package starting at 0.2 * treesub: fix ant build, add exec script * treesub: use portable octal format * treesub: add license header not sure how it even went missing.
2018-10-08added list URL for r-rodbc (#9460)Miles Perry1-0/+1
2018-10-08r-edger: add r-rcpp dependency (#9457)Justin Stanley1-0/+1
* r-edger: add r-rcpp dependency * r-edger: add r-rcpp to link deps
2018-10-08New package: pplacer (#9112)Simon Flood1-0/+46
* New package: pplacer Simple package - copies files and directory out of a zip file * Update package.py
2018-10-08figtree: new package starting at 1.4.3 (#9359)Justin Stanley1-0/+58
* figtree: new package starting at 1.4.3 * figtree: add java dep * figtree: use portable octal format * figtree: remove boilerplate
2018-10-08sspace-standard: adding threads variant to perl dependency (#9452)snehring1-1/+1
2018-10-08r-readxl: added 1.1.0 (#9454)Justin Stanley1-1/+3
2018-10-08perl-module-build new version (#9404)Strahinja Trecakov1-1/+2
2018-10-08Catalyst Package: made Python mandatory at build time (#9432)dorier1-1/+2
The build process of Catalyst requires Python at build time (see line 86) even when the +python variant is not selected. When the +python variant is selected, Python becomes required at build, link, and run time. There doesn't seem to be any restriction on the version of Python required when +python is not selected.
2018-10-08Fix: bug in VTK package (#9431)dorier1-1/+2
* Fix: bug in VTK package Fix for issue 9423 (https://github.com/spack/spack/issues/9423): compilers other than clang don't have the `is_apple` property. * VTK package: removing trailing whitespace So flake8 stops complaining.
2018-10-08py-pyspark: new package (#9419)Matthias Wolf1-0/+37
2018-10-08Update HYPRE with version 2.15.0. (#9443)Jon Rood1-0/+1
2018-10-05Pacvim new (#9273)DDevHan1-0/+45
* pacvim: new package * pacvim: removed fixme's * pacvim: added full docstring * pacvim: fixing docstring
2018-10-05py-jprops: new package @ 1.0.2 (#9417)Matthias Wolf1-0/+36
2018-10-05Canu-Updated to lastest version:1.7.1 (#9413)DDevHan1-0/+1
* Canu-Updated to lastest version:1.7.1 * canu: added sha256 hash as comment above version * canu: changed to sha256
2018-10-05add Charliecloud 0.9.2 and 0.9.3 (#9441)Reid Priedhorsky1-0/+2
2018-10-04salmon: remove static link to libstdc++ (#9343)Justin Stanley1-0/+4
2018-10-04Davix version update (#9304)Patrick Gartung2-69/+2
* Replace old version with new version * Remove patch only needed by CMS
2018-10-04VecGeom: add versions and cxxstd variant (#9303)Patrick Gartung1-4/+21
2018-10-04Valgrind: add ubsan and only64bit variants. (#9302)Patrick Gartung1-7/+14
* Add conflict for +ubsan when building with clang on MacOS * only64bit is enabled by default
2018-10-04py-py4j: add version 0.10.6 (#9418)Matthias Wolf1-3/+4
2018-10-03Package mesa: added dependency on zlib (#9424)dorier1-0/+1
2018-10-03python: add details on missing library to error message (#9332)Denis Davydov1-2/+2
When a library cannot be found, the exception now includes the name of the library that was requested.
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