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2024-11-23duckdb: add v1.1.3, deprecate <v1.1.0 (#47653)Teague Sterling1-3/+17
* duckdb: add v1.0.0, v0.10.3 * Adding issue reference * Adding issue reference * duckdb: add v1.1.0 Signed-off-by: Teague Sterling <teaguesterling@gmail.com> * Fixing styles Signed-off-by: Teague Sterling <teaguesterling@gmail.com> * duckdb: add v1.1.1 Signed-off-by: Teague Sterling <teaguesterling@gmail.com> * duckdb: Fix missing depends_on(unixodbc, when=+odbc) * Adding duckdb variants, removing old variants, removing deprecated versions Signed-off-by: Teague Sterling <teaguesterling@gmail.com> * duckdb+static_openssl: Add pkgconfig and zlib-api to link zlib when needed * duckdb: add v1.1.3 Signed-off-by: Teague Sterling <teaguesterling@gmail.com> * Update package.py for CVE-2024-41672 as suggested * [@spackbot] updating style on behalf of teaguesterling * duckdb: add CVE comment before deprecated versions --------- Signed-off-by: Teague Sterling <teaguesterling@gmail.com> Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com> Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-11-23Kokkos complex_align variant, Trilinos+PETSc enforcement for ↵finkandreas3-18/+23
Kokkos~complex_align (#47686)
2024-11-23py-opt-einsum: missing forward compat bound for python (#47757)Harmen Stoppels1-1/+2
2024-11-22py-cython: support Python 3.12+ (#47714)Adam J. Stewart4-45/+126
and add various other compat bounds on dependents
2024-11-22itk: use vendored googletest (#47687)Harmen Stoppels1-1/+3
external googletest breaks dependents because they end up with ITK_LIBRARIES set to `GTest::GTest;GTest::Main`, which then end up literally in a nonsensical link line `-lGTest::GtTest`. the vendored googletest produces a cmake config file where `ITKGoogleTest_LIBRARIES` is empty.
2024-11-22traverse.py: ensure topo order is bfs for trees (#47720)Harmen Stoppels5-109/+96
2024-11-22gromacs: oneapi does not always require gcc (#47679)Mark Abraham1-2/+8
* gromacs: oneapi does not always require gcc * Support intel_provided_gcc only with %intel classic compiler Require gcc only when needed with %intel * New approach depending on gcc-runtime directly * Update var/spack/repos/builtin/packages/gromacs/package.py Co-authored-by: Christoph Junghans <christoph.junghans@gmail.com> --------- Co-authored-by: Christoph Junghans <christoph.junghans@gmail.com>
2024-11-22eigen: self.builder.build_directory -> self.build_directory (#47728)Harmen Stoppels1-1/+1
2024-11-21vecgeom: add v1.2.10 and delete unused, deprecated versions (#47725)Seth R. Johnson1-94/+10
* vecgeom: add v1.2.10 * Remove unused+deprecated versions of vecgeom * Deprecate older v1.2.x versions * [@spackbot] updating style on behalf of sethrj
2024-11-21README.md update old tutorial URL (#47718)Harmen Stoppels1-1/+1
2024-11-21xsdk: add v1.1.0 (#47635)Satish Balay1-5/+71
xsdk: exclude pflotran, alquimia, exago heffte: ~fftw when=+hip dealii: ~sundials ~opencascade ~vtk ~taskflow
2024-11-21Add further missing C, C++ dependencies to packages (#47662)Massimiliano Culpo25-27/+48
2024-11-21aws-ofi-nccl: Add 1.8.1 to 1.13.0 (#47717)Mikael Simberg1-0/+10
2024-11-20hdf5-vol-cache %cce: add -Wno-error=incompatible-function-pointer-types (#47698)eugeneswalker1-1/+1
2024-11-20netlib-scalapack %cce: add cflags -Wno-error=implicit-function-declaration ↵eugeneswalker1-0/+2
(#47701)
2024-11-20mpifileutils%cce: append cflags -Wno-error=implicit-function-declaration ↵eugeneswalker1-1/+1
(#47700)
2024-11-20visit: add v3.4.0, v3.4.1 (#47161)kwryankrattiger5-21/+136
* Visit: Add new versions 3.4.0 and 3.4.1 * Adios2: Restrict python, 3.11 doesn't not work for older Adios2 * VisIt: Set the VTK_VERSION for @3.4: Older versions of VTK used the VTK_{MAJOR, MINOR}_VERSION variables for VTK detection. VisIt >= 3.4 uses the full string VTK_VERSION. * CI: Don't build llvm-amdgpu for non-HIP stack * VisIt: v3.4.1 handles newer Adios2 correctly * Visit: Add missing links in HDF5, set correct VTK version configuration parameter * VisIt: Add py-pip requirement and patch visit with configuration changes * HDF5 symlinks move when inside of callback * VisIt ninja install fails with python module. Using make does not * VisIt 3.4 has a high minimum cmake requirement * HDF5: Early return when not mpi for mpi symlinks * HDF5: Use platform agnostic method for creating legacy compatible MPI symlinks * Fix VISIT_VTK_VERSION handling for 8.2.1a hack
2024-11-20spack style: import-check -> import, fix bugs, exclude spack.pkg (#47690)Harmen Stoppels20-21/+63
2024-11-19build(deps): bump codecov/codecov-action from 5.0.2 to 5.0.3 (#47683)dependabot[bot]1-1/+1
Bumps [codecov/codecov-action](https://github.com/codecov/codecov-action) from 5.0.2 to 5.0.3. - [Release notes](https://github.com/codecov/codecov-action/releases) - [Changelog](https://github.com/codecov/codecov-action/blob/main/CHANGELOG.md) - [Commits](https://github.com/codecov/codecov-action/compare/5c47607acb93fed5485fdbf7232e8a31425f672a...05f5a9cfad807516dbbef9929c4a42df3eb78766) --- updated-dependencies: - dependency-name: codecov/codecov-action dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-11-19build(deps): bump docker/metadata-action from 5.5.1 to 5.6.1 (#47682)dependabot[bot]1-1/+1
Bumps [docker/metadata-action](https://github.com/docker/metadata-action) from 5.5.1 to 5.6.1. - [Release notes](https://github.com/docker/metadata-action/releases) - [Commits](https://github.com/docker/metadata-action/compare/8e5442c4ef9f78752691e2d8f8d19755c6f78e81...369eb591f429131d6889c46b94e711f089e6ca96) --- updated-dependencies: - dependency-name: docker/metadata-action dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-11-19cgal: update depends versions for 6.0.1 (#47516)Chris Marsh1-7/+57
* This extends PR #47285 to properly include some of the required version constrains of cgal 6 incl C++ standard. It also adds the new no-gmp backend as a variant. * fix style * disable cgal@6 +demo variant as the demos require qt6 which is not in spack * disable the gmp variant until clarity on how its supposed to work is provided. bound shared and header_only variants to relevant versions * Fix missing msvc compiler limit, fix variant left in * Add more comments. Better describe the gmp variant. Remove testing code * fix style
2024-11-19Add llvm v19.1.4 (#47681)Paul R. C. Kent1-0/+1
2024-11-19py-gevent: add v24.2.1, v24.10.3, v24.11.1 (#47646)Wouter Deconinck1-0/+10
* py-gevent: add v24.2.1, v24.10.3 * py-gevent: add v24.11.1
2024-11-19Restrict disable dynamic thread scaling only to 3.1 version (#47673)AMD Toolchain Support1-1/+1
Co-authored-by: vijay kallesh <Vijay-teekinavar.Kallesh@amd.com>
2024-11-19Add new 2025.0.1 Oneapi patch packages (#47678)Andrey Perestoronin6-0/+41
2024-11-19openturns: fix deps (#47669)Harmen Stoppels1-29/+46
2024-11-19Make oneAPI library-with-sdk specialize library class (#47632)Mark Abraham1-1/+1
2024-11-19systemd: symlink the internal libraries so they are found in rpath (#47667)Harmen Stoppels1-0/+11
2024-11-19sensei: fix install rpath for python extension (#47670)Harmen Stoppels1-5/+16
2024-11-19gmp: fix cxx dependency, remove dependency on fortran (#47671)Massimiliano Culpo1-3/+2
2024-11-19solver: add a timeout handle for users (#47661)Massimiliano Culpo3-1/+26
This PR adds a configuration setting to allow setting time limits for concretization. For backward compatibility, the default is to set no time limit.
2024-11-19pika: Add 0.30.1 (#47666)Mikael Simberg1-0/+1
2024-11-19netcdf-cxx: add a maintainer (#47665)Dom Heinzeller1-0/+2
2024-11-19Restore message when concretizing in parallel (#47663)Massimiliano Culpo1-0/+5
It was lost in #44843
2024-11-19py-non-regression-test-tools: add v1.1.6 & remove v1.1.2 (tag removed) (#47622)teddy1-2/+2
* py-non-regression-test-tools: add v1.1.6 & remove v1.1.2 (tag removed) * Update var/spack/repos/builtin/packages/py-non-regression-test-tools/package.py Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com> --------- Co-authored-by: t. chantrait <teddy.chantrait@cea.fr> Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2024-11-18cached_cmake: mpifc is not always defined (#46861)Richard Berger2-2/+5
* cached_cmake: mpifc is not always defined * mpich: only depend on fortran when +fortran
2024-11-18eigen: enable ROCm support and add master version (#47332)afzpatel1-1/+20
* eigen: enable ROCm support and add master version * change boost dependency to only for tests
2024-11-18llvm: fix sysroot and build on darwin (#47336)Tom Scogland1-1/+19
The default build of clang on darwin couldn't actually build anything because of a lack of a sysroot built in. Also several compilation errors finding the system libc++ cropped up, much like those in GCC, and have been fixed.
2024-11-18yambo: add v5.2.3, v5.2.4 (#47350)Lydéric Debusschère1-11/+102
* packages: Update 'yambo' * add call to 'resource' method to download Ydriver and iotk during fetch instead of during build * air-gapped installation could be performed since version 5.2.1 * add versions 5.2.3 and 5.2.4 * remove some inexistant configure options for versions "@5:" * add a sanity_check on 'bin/yambo'
2024-11-18grep: add `executables` attribute and `determine_version` method (#47438)Mosè Giordano1-0/+12
2024-11-18py-gitpython: add v3.1.43 (fix CVEs) (#47444)Wouter Deconinck1-29/+66
* py-gitpython: add v3.1.43
2024-11-18Automated deployment to update package flux-sched 2024-11-05 (#47449)Vanessasaurus1-0/+1
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
2024-11-18Automated deployment to update package flux-security 2024-11-05 (#47450)Vanessasaurus1-0/+1
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
2024-11-18mivisionx, migraphx and rocal: add and fix tests (#47453)afzpatel7-62/+179
* fix mivisionx test, add migraphx build-time test and add rocal unit test * fix miopen-hip linking issue * remove setup_run_environment from roctracer-dev * change patch file
2024-11-18tb-lmto: new package (#47482)snehring1-0/+66
* tb-lmto: adding new package tb-lmto * tb-lmto: update copyright year
2024-11-18Add py-phdf@0.11.4 and add conflict for py-pyhdf@0.10.4 with numpy@1.25: ↵Dom Heinzeller1-0/+3
(#47656)
2024-11-18orca: add v6.0.1, avx2-6.0.1 (#47489)alvaro-sch1-1/+13
* orca: add 6.0.1 versions * orca: checksum fix for avx2-6.0.1 * orca: fix version string for avx2-6.0.1 * orca: checksum fix for 6.0.1
2024-11-18geomodel: Fix dependencies (#47437)Paul Gessinger1-2/+5
* geomodel: Add dependency on `hdf5` for `+pythia`, require `hdf5+cxx` * fix visualization dependencies * geomodel: Add soqt dependency * update dependency on soqt to drop explicit qt variant
2024-11-18py-pymongo: add v4.10.1 (fix CVE) (#47501)Wouter Deconinck2-10/+20
* py-pymongo: add v4.10.1 * py-pymongo: fix copyright header spacing * py-hatch-requirements-txt: add v0.4.1 --------- Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
2024-11-18py-waitress: add v3.0.1 (#47509)Wouter Deconinck1-1/+6
generated by cgit v1.2.3-70-g09d2 (git 2.46.0) at 2025-04-03 15:28:23 +0000