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2020-11-16vgm: Switch all URLs to https (#19943)Dr. Christian Tacke1-3/+3
2020-11-16[acts] Add versions 1.2.1 and 2.0.0 (#19936)Hadrien G1-0/+2
2020-11-16texlive: Fix install of @live version (#19941)Ruben Di Battista1-1/+10
The unattended install using the pre-compiled binaries (tl-install) needs a .profile file or it goes in interactive mode blocking the install process forever
2020-11-16Trilinos: update 13.0.1 (#19944)Satish Balay1-1/+1
2020-11-16add new version py-wavelets@1.1.1 (#19930)Andreas Baumbach1-0/+3
* add new version py-wavelets@1.1.1 * also update dependencies * Update package.py
2020-11-16graphmap: Fix for aarch64 (#19935)t-nojiri1-0/+2
2020-11-16Added new versions for the py-attrs package (#19938)Matthieu Dorier1-1/+4
2020-11-16[dd4hep] switch to ninja generator to avoid running out of memory … (#19940)vvolkl1-0/+3
* [dd4hep] switch to ninja generator to avoid running out of memory while compiling ddparsers * [dd4hep] format
2020-11-16vmc: Add Version 1-0-p3 (#19942)Dr. Christian Tacke1-1/+2
2020-11-16add new version py-tifffile@2020.10.1 (#19929)Andreas Baumbach1-0/+3
* add new version py-tifffile@2020.10.1 * also update dependencies * Update package.py
2020-11-16py-numpy: Add Fujitsu Fortran compiler to compiler type. (#19858)Tomoki, Karatsu6-0/+224
* py-numpy: Add Fujitsu Fortran compiler to compiler type. py-scipy: Specify Fujitsu to fcompiler types. * Create patches applicable to each version.
2020-11-16singularity: added v3.6.4 (#19939)Dr. Christian Tacke1-1/+2
2020-11-15macOS: Big Sur reports as either 10.16 or 11.0 (#19900)Adam J. Stewart1-0/+1
2020-11-15fix a typo in podio package script (#19928)Joseph Wang1-1/+1
2020-11-14environment-modules: add version 4.6.1 (#19926)Xavier Delaruelle1-1/+2
2020-11-14Bugfixes for lbann sw stack (#19903)Brian Van Essen4-30/+80
* Added guard for setting CUB_DIR to only when cuda variant is true * Added support for OpenMP on OSX platforms * Updated the way that LBANN, Hydrogen, and DiHydrogen handle apple-clang with OpenMP and Clang installed on OS X via brew. * Fixed bug in spec resolution * Fixed merge conflict * Fixed typo * Fixed flake8
2020-11-14Add new package: druid (#19911)darmac1-0/+26
2020-11-14bpp-phyl-omics package (#19734)ilbiondo1-0/+25
2020-11-14PAPI package: added cuda and nvml support (#19896)G-Ragghianti1-2/+10
* Added cuda support * Added cuda and nvml variants * Refined version conflict logic.
2020-11-14bpp-seq-omics package (#19733)ilbiondo1-0/+22
2020-11-14Don't use prefix.lib in tcl/tk/glib/etc (#19761)Adam J. Stewart13-84/+79
2020-11-14nbdkit: new package at v1.23.7 (#19922)darmac1-0/+26
2020-11-14ncompress: new package at v4.2.4.6 (#19923)darmac1-0/+19
2020-11-14openblas: fix to build v0.3.11 or later with Fujitsu compiler. (#19853)Tomoki, Karatsu2-2/+17
2020-11-14libjson: new package at v0.8 (#19921)darmac1-0/+24
2020-11-14iproute2: new package at v5.9.0 (#19920)darmac1-0/+25
2020-11-14httping: new package at v2.5 (#19919)darmac1-0/+27
2020-11-14hashcat: new package at v6.1.1 (#19918)darmac1-0/+26
2020-11-14argon2: new package at v20190702 (#19917)darmac1-0/+23
2020-11-14newt: new package at v0.52.21 (#19915)darmac1-0/+20
2020-11-14mathematica : added v12.1.1 (#19842)Antonio Arena1-2/+7
2020-11-14nwchem: remove patches for v6.6 (no longer supported) (#19906)Edoardo Aprà1-31/+0
Since spack no longer offers NWChem 6.6, there is no need of the patch lines.
2020-11-14ipcalc: new package at v0.2.3 (#19912)darmac1-0/+29
2020-11-13[gcc] depends_on diffutils (for all versions) (#19907)Wouter Deconinck1-0/+1
2020-11-13Updated STAR to version 2.7.6a (#19904)Alexander Baumgarten1-1/+2
2020-11-13Feature/r tximportdata (#19902)Alexander Baumgarten1-0/+16
* # FIXME: Add a list of GitHub accounts to # FIXME: Add a list of GitHub accounts to Package for r-tximportData * Fixed file format / flake8 errors
2020-11-13binutils: Fix checksum for 2.35.1 (#19901)fodinabor1-1/+1
As noted in #19899 and introduced by #19827
2020-11-13Add sio and add it as possible dependency for podio (#19875)Thomas Madlener2-1/+65
Newest podio can use SIO as backend
2020-11-13AMD ROCm - HIP update and bump up version to 3.9.0 for rccl,debug agent, ↵arjun-raj-kuppala4-9/+21
hip-rocclr and atmi (#19832) * AMD - Bumped up version for hip-rocclr, rocm-opencl, rocm-smi-lib * AMD ROCm - HIP update and bump up version to 3.9.0 for rccl,debug agent, hip-rocclr and atmi * Update package.py * Update package.py * Update package.py * Update var/spack/repos/builtin/packages/hip/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-11-13suite-sparse: mpfr, gmp needed for @5.8.0: (#19898)eugeneswalker1-2/+2
2020-11-13bump up version for 3.9.0 (#19894)Sreenivasa Murthy Kolam1-1/+2
2020-11-13openfoam: Fix for aarch64 (#19803)t-nojiri1-1/+2
* openfoam: Fix for aarch64 * openfoam: Add comment for openfoam-org
2020-11-12ROCm 3.9 Stage2 recipe (#19838)Ganesh Kumar10-12/+22
Co-authored-by: root <root@mlseqa-hyd-virt-srv-07.amd.com>
2020-11-12Add feq-parse package (#19891)Joseph Schoonover1-0/+21
Co-authored-by: Joe Schoonover <joe@fluidnumerics.com>
2020-11-12binutils: add version 2.35.1 (#19827)Tim Haines1-0/+1
2020-11-12move sbang to unpadded install tree root (#19640)Greg Becker7-82/+212
Since #11598 sbang has been installed within the install_tree. This doesn’t play nicely with install_tree padding, since sbang can’t do its job if it is installed in a long path (this is the whole point of sbang). This PR changes the padding specification. Instead of $padding inside paths, we now have a separate `padding:` field in the `install_tree` configuration. Previously, the `install_tree` looked like this: ``` /path/to/opt/spack_padding_padding_padding_padding_padding/ bin/ sbang .spack-db/ ... linux-rhel7-x86_64/ ... ``` ``` This PR updates things to look like this: /path/to/opt/ bin/ sbang spack_padding_padding_padding_padding_padding/ .spack-db/ ... linux-rhel7-x86_64/ ... So padding is added at the start of all install prefixes *within* the unpadded root. The database and all installations still go under the padded root. This ensures that `sbang` is in the shorted possible path while also allowing us to make long paths for relocatable binaries.
2020-11-12Testing: ensure that all packages can be pickled (#19890)Peter Scheibel1-0/+24
As of #18205, all packages must be pickle-able to be installed by Spack. This adds a test to check that each package can be pickled. If any package fails to pickle, the test keeps going and collects the names of all failed packages; it then takes the first one that failed and attempts to re-pickle it, generating the full stack trace for the failed pickle attempt.
2020-11-12run unit tests on 3.8 only for Mac OS vs. both 3.8 and 3.9 (#19889)Peter Scheibel1-1/+1
2020-11-12openmpi: external detection support (#18600)Robert Blake1-0/+140
2020-11-12MavenPackage: allow additional build args (#19676)Adam J. Stewart2-2/+24
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