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2019-05-27commands: completion for new --update and --header options (#11566)Todd Gamblin1-2/+2
2019-05-27docs: set gettext_uuid to False to reduce churn (#11567)Todd Gamblin2-1/+2
- `gettext_uuid=True` makes every commit update every .pot file in spack/localized-docs, and speeds up the internationalized doc build slightly. - Optimize for less repository churn, and use `python-levenshtein` to accelerate the build instead.
2019-05-27mirror create: non-zero return code (#8585)Axel Huebl1-0/+2
`mirror create` should return a non-zero return code if errors occured.
2019-05-26r-geomorph: new version (#11556)Levi Baber1-1/+2
2019-05-26Add a new version for gnutls. (#11546)健美猞猁1-0/+2
* Update URL and add a new version. * Fix flake8 issues. * Remove newly-added duplicate url_for_version.
2019-05-26py-markdown: new version (#11548)Levi Baber1-1/+5
2019-05-26Add new versions for intel-mkl-dnn. (#11549)健美猞猁1-1/+4
* Add new versions for intel-mkl-dnn. * Remove the last trailing line. * Update url and set 0.19 as preferred.
2019-05-26r-emmli: new package (#11557)Levi Baber1-0/+18
2019-05-26Update GnuPG and associated packages (#11564)Olaf Mersmann4-1/+6
* libassuan: Update to v2.5.3 * gnupg: Update to v2.2.15 * libgpg-error: Update to v1.36 * libgcrypt: Update to v1.8.4
2019-05-26New Package: sl (#11565)Axel Huebl1-0/+25
Add the sl program.
2019-05-26link_tree: add option to merge link trees with relative targetsTodd Gamblin2-40/+90
- previous version of link trees would only do absolute symlinks - this version can do relative links using merge(relative=True)
2019-05-26docs: make docs build relocatable for localized buildsTodd Gamblin21-50/+59
- make all Spack paths relative to a `_spack_root` symlink, so that we can easily relocate the docs build *outside* lib/spack/docs - set some useful defaults for gettext translation variables in conf.py - update `relativeinclude` and other references to the spack root in the RST files to use _spack_root
2019-05-26docs: remove legacy import for Sphinx 1.7Todd Gamblin1-6/+1
2019-05-26docs: match ReadTheDocs; use -W (warnings as errors) with SphinxTodd Gamblin1-1/+1
2019-05-26commands: add --update option to `spack list`Todd Gamblin5-96/+171
- Add a `--update FILE` option to `spack list` - Output is written to the file only if any package is newer than the file - Simplify the code in docs/conf.py using this new option
2019-05-26commands: Add --header and --update options to `spack commands`Todd Gamblin4-54/+143
The Spack documentation currently hard-codes some functionality in `conf.py`, which makes the doc build less "pluggable" for things like localized doc builds. In particular, we unconditionally generate an index of commands and a package list as part of the docs, but those should really only be done if things are not up to date. This commit does the following: - Add `--header` option to `spack commands` so that it can do the work of prepending text to its output. - Add `--update FILE` option to `spack commands` that makes it generate a new command index *only* if FILE is out of date w.r.t. commands in the Spack source. - Simplify code in `conf.py` to use these options and only update the command index when needed.
2019-05-26docs: Use HDF5 as the example package for `spack graph`Todd Gamblin2-13/+17
2019-05-26xsdk@0.4.0: update dealii defaults wrt changes in a973ab475 (#11562)Satish Balay1-2/+2
wrt xsdk@develop - ginkgo requires openmp - so disable until we can add openmp dependencies consistantly
2019-05-24mbedtls: add pic variant (#11558)Mark W. Krentel1-1/+15
Add variant 'pic' for including in shared libraries. Add build dependency on perl. Compiling mbedtls runs several perl scripts. Add versions 2.7.10 and 2.16.1, the heads of the two main stable branches.
2019-05-24Update libensemble to v0.5.0 (#11544)Stephen Hudson1-3/+5
2019-05-24Add nettle@3.4.1 (#11547)健美猞猁1-0/+1
2019-05-24build env: simplify handling of parallel jobs (#11524)Massimiliano Culpo11-37/+104
This PR implements several refactors requested in #11373, specifically: - Config scopes are used to handle builtin defaults, command line overrides and package overrides (`parallel=False`) - `Package.make_jobs` attribute has been removed; `make_jobs` remains as a module-scope variable in the build environment. - The use of the argument `-j` has been rationalized across commands - move '-j'/'--jobs' argument into `spack.cmd.common.arguments` - Add unit tests to check that setting parallel jobs works as expected - add new test to ensure that build job setting is isolated to each build - Fix packages that used `Package.make_jobs` (i.e. `bazel`)
2019-05-24Updated lmod (to version 8.1.5) and associated dependencies (#11552)Massimiliano Culpo3-8/+22
Lmod version 8.1.5 Lua version 5.3.5 Lua Filesystem 1.7.0.2 Turned tcl to a link dependency so that Lmod's configure can find it.
2019-05-23Add latest version of py-cython (#11494)Adam J. Stewart1-5/+21
* Add latest version of py-cython * Fix cython unit tests
2019-05-23docs: truncate `spack list` output in basic usageTodd Gamblin1-3/+6
`spack list` output is very long and takes up a lot of space in the docs. Truncate it to just 10 lines and link to the package list page.
2019-05-23LIBXSMM 1.12.1 (#11538)Hans Pabst1-26/+27
2019-05-22Add cppcheck version 1.87. (#11536)Jon Rood1-0/+1
2019-05-22Add CMake 3.14.3 and 3.14.4. (#11534)Jon Rood1-0/+2
2019-05-22package vtk - improve gl handling (#11530)Omar Padron1-21/+20
* package vtk - improve gl handling * package vtk - minor cleanup
2019-05-22Fix typo in openmpi@2.1.6 libmpi.so comment. (#11529)Dustin Wheeler1-1/+1
2019-05-21Add Fujitsu compiler to Spack. (#11287)t-karatsu7-5/+87
* Add Fujitsu compiler to Spack. * Fixes for flake8 * Chenges location of FCC to subdirectory called case-insensitive * Add compiler tests for Fujitsu compiler * Modify the logic of taking compiler version for new version of Fujitsu compiler
2019-05-21dealii: add 9.1.0 (#11527)Denis Davydov1-2/+3
2019-05-21py-htseq: new version (#11525)Levi Baber1-0/+1
2019-05-21Add version (#10594)Elizabeth Fischer1-0/+1
2019-05-21Update scorep and friends (#11523)Michael Kuhn4-1/+5
2019-05-21dealii: fix symengine constraints (#11517)Denis Davydov1-7/+8
disable symengine constraints due to limitations of Spack
2019-05-20mesa: Patch missing gl symbols in OSMesa (#11518)Chuck Atkins2-0/+49
2019-05-20OpenMPI: update behavior for fabrics/schedulers=auto (#11431)Glenn Johnson1-10/+19
* When fabrics=auto or schedulers=auto, the intent is to defer to the OpenMPI configure and let it determine and use what it finds available on the system. The current behavior for 'with_or_without' in the case of 'auto' explicitly disables all possible values. This updates the logic to call 'with_or_without' only when the value of fabrics/schedulers is not 'auto'. * To allow explicitly disabling all fabrics/schedulers, each of these variants has added support for 'none' (which is also the default value). * Add a conflict for the loadleveler scheduler for openmpi-3 and above as it is no longer a valid configure option.
2019-05-20Make flake8 check spack script as well as .py files (#11513)Adam J. Stewart1-1/+1
* Make flake8 check bin/spack
2019-05-20Get Cray OS version from PrgEnv-cray (#10774)Mario Melara1-2/+2
The regex used for finding the Cray OS version from the PrgEnv-cray module was not exact and was at times pulling the version from other PrgEnv modules. This updates the regular expression to be more exact.
2019-05-20Update optional-lite and span-lite to use CMakePackage (#11407)Andrew Gaspar3-3/+70
* Update optional-lite and span-lite to use CMakePackage These packages only have CMake installs on their most recent versions. Therefore, we overload all of the CMake stages to fallback to the old versions (no-op for most, copytree for install), and use CMakePackage on the new versions. * Add new string-view-lite version with CMake install support * Only override phases for old versions of *-lite packages
2019-05-19Add py-kmodes package (#11497)Adam J. Stewart1-0/+25
2019-05-19Add latest version of joblib (#11495)Adam J. Stewart1-4/+7
2019-05-19Add latest version of setuptools (#11493)Adam J. Stewart1-1/+2
2019-05-18Update Umpire package with new versions (#11441)David Beckingsale1-1/+17
* Update Umpire package with new versions * Fix version ordering
2019-05-18trilinos: add variant to disable chaco from seacas (#11482)Denis Davydov2-2/+23
* trilinos: add variant to disable chaco from seacas keep it OFF by default due to the presence of the global symbol "divide" that can lead to symbol clash with other libraries, for example see https://github.com/dealii/dealii/issues/8170#issuecomment-492700787 * dealii: add conflict statement for adol-c and Trilinos SEACAS Chaco
2019-05-18dyninst: rework the cmake args for version 10.1 and later (#11484)Mark W. Krentel1-22/+41
* dyninst: rework the cmake args for version 10.1 and later Add a separate when() case for the cmake args for Dyninst 10.1.0 and later. The prereq args have changed enough that this makes things easier going forward. (My previous commit 26b9369c was inaccurate and temporary.) Dyninst 10.1.0 accepts boost 1.70, but earlier dyninst are restricted to <= 1.69 (not worth back porting every boost change). Change all the dyninst versions to 3 digits for clarity and consistency. * Add version 10.1.0.
2019-05-18QMCPACK Update May 2019 (#11492)Nichols A. Romero1-7/+8
* Add QMCPACK 3.7.0 * SOA is now the default. * Add QMCPACK converter based on QE 6.4
2019-05-18Add conflicts in deal.II package between SymEngine and Trilinos variants ↵Jean-Paul Pelteret1-0/+7
(#11499)
2019-05-18Fix typo in spack executable (#11512)Adam J. Stewart1-1/+1