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* Set default provider for every virtual package
* Add unit test to ensure that every virtual package has a default provider explicitly set
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* py-pysam requires curl.
* py-pysam conflicts with htslib@1.7.
* Bump py-pysam versions.
* Add more dependencies.
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Built once on Centos 7 w/ external GCC 4.8.5 compiler
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* a new package: papyrus.
* removed the empty cmake_args
* changed md5 checksum for v1.0.0
* make a long line short
* one long line url
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* Bump samtools and hstlib to version 1.8.
* rm .bak.
* Bump bcftools to 1.8.
* bcftools@1.8 depends on libzip.
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* py-more-itertools: new package
* code review
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* Fix a typo and replace hard-coded version.
* version -> self.version.
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According to this comment:
https://github.com/open-mpi/ompi/issues/4338#issuecomment-383982008
on an OpenMPI issue, using `--enable-static` silently disable slurm
support.
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* gdal: update
* Remove unneeded depends(python)
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* pism: new package
* Implement code review
* Remove pointless docstring5
* Fixed missing trailing quote
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* py-numpy: update
* Better constrain when can / cannot parallel build.
* Update SciPy parallel logic to be specific to Python 3.5+, same as in Numpy.
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* py-bsddb3: update
* Change py-setuptools to build dependency
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* py-crispresso: Create new package
* py-crispresso: Create new package
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* New Package: svn2git
https://github.com/nirvdrum/svn2git
svn2git is a tiny utility for migrating projects from Subversion to Git while
keeping the trunk, branches and tags where they should be. It uses git-svn to
clone an svn repository and does some clean-up to make sure branches and tags
are imported in a meaningful way, and that the code checked into master ends up
being what's currently in your svn trunk rather than whichever svn branch your
last commit was in.
* Actually requires +perl variant of subversion.
* fix style issue.
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* A new package: nanopb.
* flake8.
* Remove py-pytorch.
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* Bump pgi to 18.4.
* Remove the empty line.
* Update.
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* Bump gatk version to 4.0.4.0.
* Update.
* Fixed.
* Fixed.
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* A new package: py-openslide-python.
* Update.
* Remove py-pytorch package.
* Remove nektar package.
* Remove install_time_test_callbacks
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* Make symlinking python3->python optional
* Added reference to PEP 394
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* sphinx: Updated to v1.7.4
* Update package.py
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* bedops: Create new package
* fix install method
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* Added magma package
* Incorporated Serban's change
* Remove deleted files
* argparse.py
* Sync forked Spack repo in github
* Use reported version of IBM XL Fortran compiler for compiler versions
>= 16.0.
Starting with the April 2018 release, the IBM XL C and Fortran
compilers report the same version, 16.0. Consequently, there is
no need to downgrade the Fortran compiler version to match that
of the C compiler.
* Eliminate blank lines.
* Update the Spectrum MPI package.py file to specify the correct compilation
scripts for the PGI compilers.
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https://github.com/spack/spack/issues/7965#issuecomment-385953224
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Fixes #7924
Spack's yaml schema validator was initializing all instances of
unspecified properties with the same object, so that updating the
property for one entry was updating it for others (e.g. updating
versions for one package would update it for other packages).
This updates the schema validator to instantiate defaults with
separate object instances and adds a test to confirm this behavior
(and also confirms #7924 without this change).
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* mvapich2: add registration cache and file systems variants, avoid empty --with-pm= if no process manager is specified, add missing leading dash in --disable-silent-rules
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(#7949)
* mpifileutils: roll back to dtcmp v1.0.3 due to API change, add option to build master branch
* add comment to explain why certain dtcmp is required, rename version for git branch
* dtcmp v1.0.2 is missing github tarball
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When building eospac with %clang, spack's Fortran compiler wrapper is called
'flang', which is rejected by the eospac build system..Allow compilation with
%clang by patching the eospac build system.
My testing only covers %clang where flang is actually gfortran. However, this
patch only registers 'flang' as a known Fortran compiler and does not set any
flags or options that are compiler specific.
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* mfem: fix concretization
* Fix hypre deps again
* Update package.py
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Add configurable HTTP, Python and readline support.
Add previously missing dependencies.
Minor patch to improve Python support (see https://github.com/xrootd/xrootd/pull/695).
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