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2020-03-20multiprocessing: allow Spack to run uninterrupted in background (#14682)Greg Becker2-47/+84
Spack currently cannot run as a background process uninterrupted because some of the logging functions used in the install method (especially to create the dynamic verbosity toggle with the v key) cause the OS to issue a SIGTTOU to Spack when it's backgrounded. This PR puts the necessary gatekeeping in place so that Spack doesn't do anything that will cause a signal to stop the process when operating as a background process.
2020-03-20spack checksum: Use package's fetch_options (#15481)Michael Kuhn2-3/+12
This makes sure that a package's fetch_options are used when fetching new versions to checksum. This allows working around problems with slow servers or those requiring a cookie to be set.
2020-03-20tau: add dependency on hwloc (#15589)eugeneswalker1-0/+1
2020-03-20sentencepiece: add new package (#15596)Adam J. Stewart1-0/+20
2020-03-20py-dgl: add new package (#15594)Adam J. Stewart1-0/+94
2020-03-20Add NLopt version 2.6.1 (#15595)Benjamin Fovet1-0/+1
2020-03-20papi: add version 6.0.0 (#15590)Kevin Manalo1-0/+1
2020-03-20root: Add version 6.20.{00,02} (#15487)Dr. Christian Tacke1-4/+17
* Add version 6.20.{00,02}, don't yet mark it preferred * It needs zstd * It needs numpy (at least for 6.20.00:6.20.03) * Reorder python dependencies a bit * Add mlp variant, default False Older versions always include mlp, so no conflicts there. * Disable tmva, because it needs mlp * tmva needs mlp, so add conflict
2020-03-20Show the packaga name for a missing patch sha256 (#15441)Dr. Christian Tacke1-1/+2
When a patches sha256 is missing, also show the packagename, so that analyzing is easier.
2020-03-20Added two new versions of spdlog (#15586)Matthieu Dorier1-0/+2
2020-03-20add new package: glusterfs (#15565)darmac1-0/+44
* add new package: glusterfs * fix list_depth for url * remove list_depth * add list_url for glusterfs
2020-03-20add new package lksctp-tools (#15564)darmac1-0/+20
Co-Authored-By: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2020-03-20py-decorator: added v4.4.2 (#15581)Adam J. Stewart1-1/+2
2020-03-20py-networkx: add 2.4 (#15582)Adam J. Stewart1-7/+20
2020-03-20py-tfdlpack: add new package (#15583)Adam J. Stewart1-0/+45
2020-03-20acts-core: added v0.18, updated boost dependency (#15584)Hadrien G1-1/+3
2020-03-20htop: add missing python build dependency (#15585)Andreas Baumbach1-0/+1
2020-03-20perfstubs: added new package (#15547)Kevin Huck1-0/+34
2020-03-19Improvements to Rust's Installation (#15395)Andrew Gaspar2-46/+513
* Add sources and resources for each version of Rust * install bootstrapping compiler into stage * Add libgit2 * Install bootstrapping compiler correctly * implement full rust bootstrap * Remove support for Rust pre-1.14 Also add lots of comments * Support only Rust 1.17 and newer * Remove < 1.23 versions of Rust * Change the layout of rust_releases for maintainability * Remove LLVM variant * Address flake8 issues * Make libgit2 curl variant default False, conflict 0.28 and newer * Remove binutils dependency * Add ARM64 while we're at it * flake8 * use the 'python' routine rather than relying on the correct python to be picked up
2020-03-19add new package: bcache (#15563)darmac2-0/+49
* add new package: bcache * add depends: gettext for libintl
2020-03-19add new package: libiscsi (#15579)darmac1-0/+28
2020-03-19Update MVAPICH2 package for 2.3.3 release (#15578)Nithin Senthil Kumar1-1/+2
Co-authored-by: senthilkumar.16 <senthilkumar.16@nowlab.cse.ohio-state.edu>
2020-03-19Cray bugfix: TERM missing while reading default target (#15381)Greg Becker1-6/+8
Bug: Spack hangs on some Cray machines Reason: The TERM environment variable is necessary to run bash -lc "echo $CRAY_CPU_TARGET", but we run that command within env -i, which wipes the environment. Fix: Manually forward the TERM environment variable to env -i /bin/bash -lc "echo $CRAY_CPU_TARGET"
2020-03-19cosma: added package at v2.0.2 (#15497)Teodor Nikolov1-0/+69
* [new package] COSMA * Use virtual dependencies
2020-03-19add charliecloud/0.14; remove umoci/skopeo; remove builder variant (#15573)Jordan Ogas1-13/+14
* add charliecloud/0.14; remove umoci/skopeo; remove builder variant * fix typo * add maintainer; add explicit config doc options; add py-requests as run dependency * add autoconf build dependencies
2020-03-19petsc fix hdf5 (#15572)Kai Germaschewski1-1/+2
* petsc: add checksum for 3.12.4 * petsc: constrain hdf5 to <= 1.10.x Current petsc will error when being build with hdf5 1.12, so this ensures that a compatible hdf5 will be used. Fix suggested by @balay.
2020-03-19add new package: ntirpc (#15561)darmac1-0/+22
2020-03-19add new package: yarn (#15562)darmac1-0/+22
2020-03-19Add package: py-deprecated (#15571)Yannik Stradmann1-0/+20
https://github.com/tantale/deprecated
2020-03-19refactor: `spack.package.possible_dependencies()` handles virtualsTodd Gamblin4-44/+75
- [x] move some logic for handling virtual packages from the `spack dependencies` command into `spack.package.possible_dependencies()` - [x] rework possible dependencies tests so that expected and actual output are on the left/right respectively
2020-03-19bugfix: `spack.package.possible_dependencies()` should return virtualsTodd Gamblin1-7/+1
`spack.package.possible_dependencies()` was forgetting to pass the `visited` dict to recursive calls; this fixes it
2020-03-19openssl: added v1.1.1e and v1.0.2u (#15568)Michael Kuhn1-0/+2
2020-03-19update attr version to 2.4.48 (#15535)darmac1-2/+12
* update attr version to 2.4.48 * attr: remove redundant make() in install()
2020-03-19amdblis + blis: fix spack info and libs query (#15566)Toyohisa Kameyama2-0/+5
2020-03-18py-matplotlib: add 3.2.1 (#15560)Adam J. Stewart1-1/+2
2020-03-18Buildcache: fix relocation of binaries with relative rpaths (#15558)Patrick Gartung1-1/+1
2020-03-18hpctoolkit: restore binutils 2.34 for master (#15556)Mark W. Krentel1-3/+4
Hpctoolkit master was recently updated to test for and allow old binutils <= 2.33.1 and/or new binutils 2.34. Older hpctoolkit up to 2030.03.01 will forever require :2.33.1. Adjust the libunwind dependency for safety with the current concretizer.
2020-03-18Split: Fabtest/libfabric (#15557)Axel Huebl2-71/+21
Fabtests provides runtime analysis tools and examples of libfabric. As with other projects that are tightly version-bound, e.g. `py-adios` and `adios`, the fact that releases stem from the same repo does not imply they should be the same package. Remove resources, which complicate the libfabric build, and update the fabtests package accordingly.
2020-03-18Upstreams: don't write metadata directory to upstream DB (#15526)Kai Germaschewski1-1/+1
When trying to use an upstream Spack repository, as of f2aca86 Spack was attempting to write to the upstream DB based on a new metadata directory added in that commit. Upstream DBs are read-only, so this should not occur. This adds a check to prevent Spack from writing to the upstream DB
2020-03-18Trilinos: Add more variants (~netcdf ~matio ~glm) (#15483)Kelly (KT) Thompson1-8/+25
* Trilinos: Add more variants + Provide three new variants to allow building trilinos without netcdf, matio, or glm. + No change to defaults. * Fix style issue.
2020-03-18Tuiview movetogithub (#15498)Neil Flood1-4/+6
* py-tuiview: Source has moved to github * py-tuiview: Explicitly require +python on gdal dependency * py-tuiview: Versions up to 1.1.99 are qt4 only * py-tuiview: Add version 1.2.6, which is qt5 only * Explicit version range on gdal dependency
2020-03-18petsc@3.7 fix dependency of superlu-dist@5.1.3 (#15551)Satish Balay1-2/+2
2020-03-18py-horovod: set appropriate build env vars (#15548)Adam J. Stewart3-44/+106
* py-horovod: set appropriate build env vars * mxnet: add maintainer * py-horovod: fetch git submodules * py-torch: fix CUDA conflicts
2020-03-18modified spackage for flecsi and cinch (#15555)ktsai72-5/+7
2020-03-18adol-c:updating sources location (#15532)gauthier121-8/+13
* adol-c:updating sources location * Update var/spack/repos/builtin/packages/adol-c/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-03-18package/QGIS: fix cmake/FindPyqt.py (#15455)Sinan2-0/+27
* fix cmake/FindPyqt.py * apply patch * generalize patch * rename patch * fix typo Co-authored-by: Sinan81 <sbulut@3vgeomatics.com> Co-authored-by: Sinan81 <Sinan81@github>
2020-03-18Use python extend_path as pyqt sip fix (#15297)Sinan5-41/+53
* try extend path to solve PyQt5.sip not found issue * disable private sip installation in sippackage class * undo manual PyQt5 dir creation in py-sip site-packages dir * fix typo * fix typo * also apply fix to PyQt4 * tidy up * flake8 and tidy up * tidy and undo hardcoding of python_include_dir * replace hardcoded python inc dir * fix minor issues * rethink include dir variable name * improve style * add new versions * implement new sip setup to qsci installation * set sip-incdir correctly for the new setup * setup extend_path thing before qsci python bindings * take care of conflict * flake8 * also extend for PyQt4 * improve style * improve style * SipPackage build sys should depend on py-sip * consolidate extend_path fixes into SipPackage * fix typo * fix bugs * flake8 * revert sip doc to pre-resource setup * import os module * flake8 Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
2020-03-18revbayes: Update pre-build process (#15485)Nick Booher1-0/+5
2020-03-18Cctools 7.1.0 (#15506)Benjamin Tovar1-12/+41
* update to 7.1.0 * adds gettext as dependency (needed to link with python) * disable python2 or python3 as needed
2020-03-18add new package: acl (#15514)darmac1-0/+30
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