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2016-06-18Merge remote-tracking branch 'upstream/develop' into developMario Melara22-115/+993
"Updating NERSC branch"
2016-06-18Got rid of init_config flag since we don't need it. Instead we update the ↵Mario Melara1-18/+22
cache config if there are any changes
2016-06-17Merge pull request #1065 from epfl-scitas/packages/espresso_updateTodd Gamblin1-6/+18
espresso : update to 5.4.0
2016-06-17Merge pull request #1060 from mathstuf/no-break-long-wordsTodd Gamblin1-1/+3
tty: do not break long words
2016-06-17Merge pull request #1044 from adamjstewart/features/sncosmoTodd Gamblin9-101/+432
Add py-sncosmo package
2016-06-17Merge pull request #1061 from mathstuf/reindex-preserve-explicitTodd Gamblin1-1/+5
reindex: preserve 'explicit' flags
2016-06-17Merge pull request #946 from LLNL/features/intel2Todd Gamblin7-5/+365
Intel software packages and license enhancements
2016-06-17Python flake8 overhaulAdam J. Stewart1-76/+114
2016-06-17'find and 'add' are options for adding compilers via command lineMario Melara1-7/+7
2016-06-17Fix activation of sites.py for sncosmoAdam J. Stewart4-8/+15
2016-06-17Add additional Astropy dependenciesAdam J. Stewart3-7/+89
2016-06-17Remove version constraintsAdam J. Stewart5-13/+9
2016-06-17Allow packages to buildAdam J. Stewart4-13/+9
2016-06-17Add py-sncosmo packageAdam J. Stewart6-22/+234
2016-06-16Added init_config parameter so we don't initialize the config when user runs ↵Mario Melara2-22/+28
spack compiler add. Should ONLY add what user specifies. Find compilers takes in paths parameter.
2016-06-16Merge pull request #1068 from epfl-scitas/fixes/flake8_no_f405Todd Gamblin1-1/+1
Flake8: ignore F405
2016-06-16Merge pull request #944 from adamjstewart/features/bertiniTodd Gamblin1-0/+50
Add bertini package
2016-06-16Merge pull request #962 from adamjstewart/features/hplTodd Gamblin1-0/+119
Add HPL benchmark package
2016-06-16Replace 2.6-incompatible skipIf with a conditional.Todd Gamblin1-4/+8
- skipIf doesn't work with Python 2.6.
2016-06-16remove dead code, cleanup.Todd Gamblin2-42/+26
2016-06-16simplify instance check.Todd Gamblin1-2/+1
2016-06-16rename Mac OS X to macosTodd Gamblin3-21/+19
2016-06-16flake8: ignore F405alalazo1-1/+1
2016-06-16Added str method to mac_osx so that whenever we try to access darwins ↵Mario Melara2-9/+8
different operating systems we can grab the name correctly. This avoids having to worry whether we have a version attached to it or not.
2016-06-16Merge branch 'features/newarch' into developTodd Gamblin68-516/+2350
Conflicts: lib/spack/spack/config.py var/spack/repos/builtin/packages/lua/package.py
2016-06-16Fixes #460: Do not show variants by default in spack find.Todd Gamblin3-11/+30
This does two things: 1. By default `spack find` no longer shows variants. You have to supply `-v` to get that 2. This improves the `colify` implementation so that it no longer pads the rightmost column. This avoids the issue where if one spec was too long in the output, *all* specs would have space padding added to that width, and it would look like the output of `spack find` was double spaced. This no longer happens -- the one bad line wraps around and the other lines are now single-spaced when you use `-v` with boost.
2016-06-16qa : fixed flake8 issuesalalazo1-6/+9
2016-06-16espresso : updated to 5.4.0, added Parallel=Falsealalazo1-0/+9
2016-06-16Just call old os "unknown"Todd Gamblin1-1/+1
2016-06-16fix up packages for new architecture.Todd Gamblin4-9/+9
2016-06-16Add libxcb dependencies. Fix up packages to get py-basemap and stat to build.Todd Gamblin8-6/+170
2016-06-16be more tolerant when parsing new specs.Todd Gamblin1-6/+13
2016-06-16Add `__contains__` to arch to satsify old packages.Todd Gamblin1-2/+9
2016-06-15two minor fixesGregory Becker2-9/+9
2016-06-15Two minor fixesGregory Becker2-8/+8
2016-06-15reindex: preserve 'explicit' flagsBen Boeckel1-1/+5
Look up in the old database whether the spec was explicit or not and preserve it into the new database. Fixes #1050.
2016-06-15tty: do not break long wordsBen Boeckel1-1/+3
These "words" tend to be file paths which are best left unbroken. Fixes #1057.
2016-06-15Merge pull request #1045 from eschnett/eschnett/openmpi-verbs-usrTodd Gamblin1-1/+1
Do not pass "/usr" or "/usr/local" as path to configure
2016-06-15Merge pull request #1058 from eschnett/eschnett/bloscTodd Gamblin2-0/+257
Add packages c-blosc and hdf5-blosc
2016-06-15Merge pull request #1028 from JRWynneIII/boost-graph-parallel-fixTodd Gamblin1-34/+43
Add variant for boost graph and parallel graph
2016-06-15Merge pull request #1040 from KineticTheory/pkg-trilinosTodd Gamblin1-84/+123
Make Boost an optional feature of Trilinos.
2016-06-15Merge pull request #1037 from KineticTheory/developTodd Gamblin1-3/+8
Package serf also depends on zlib.
2016-06-15Merge pull request #1031 from opoplawski/pcreTodd Gamblin2-0/+15
Add patch to compile pcre with Intel 16.0.3 compiler
2016-06-15Merge pull request #1051 from daboehme/developTodd Gamblin1-1/+1
Use https for github in Caliper package
2016-06-14Install shared libraries correctly on LinuxErik Schnetter1-10/+18
2016-06-14Correct Blosc install on DarwinErik Schnetter2-28/+153
2016-06-14Add packages c-blosc and hdf5-bloscErik Schnetter2-0/+124
c-blosc provides the Blosc compression filter, and hdf5-blosc provides a plugin for HDF5 to use that filter.
2016-06-13Use https for githubDavid Boehme1-1/+1
2016-06-12Update formatting to meet code style requirements.Kelly (KT) Thompson1-80/+113
2016-06-12Make Boost an optional feature of Trilinos.Kelly (KT) Thompson1-4/+10
I have been unable to build Boost with some toolset/platform combinations. The users I support don't need the Boost features in Trilinos, so I have been manually hacking trilinos/package.py to disable boost. I would like to propose that these changes be added to the released version. + Add boost as a variant, default to true so there is no change to existing behavior. + Move the CMake configure options related to Boost into a conditional block that is triggered by "if '+boost' in spec".
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