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2019-10-05Consistently support pkg-config files in share subdirectory (#12838)Michael Kuhn6-2/+9
While the build environment already takes share/pkgconfig into account, the generated module files etc. only consider lib/pkgconfig and lib64/pkgconfig.
2019-10-05Package/fujitsu mpi (#12807)t-karatsu1-0/+40
* fujitsu-mpi: commit new package * Add homepage. * * Modified the MPI commands to a simple form. * Unnecessary processing has been deleted. * Add conflict for all compilers except the Fujitsu compiler. * Fix typo. * Delete versions. * Delete conditions for specifying the Fujitsu compiler.
2019-10-05expect: fix darwin install name (#13042)Adam J. Stewart1-0/+12
* expect: fix darwin install name * Fix expect binary as well
2019-10-05New package: cxxopts (#13035)Teodor Nikolov1-0/+42
* New package: cxxopts * Use +unicode instead of unicode=True - Make the unicode option more explicit * [cxxopts] Fix white space warnings
2019-10-05procps: new package (#13043)Adam J. Stewart1-0/+43
2019-10-04bugfix: issue with custom dotkit root in config.yaml (#13046)Massimiliano Culpo2-1/+25
When removing support for dotkit in #11986 the code trying to set the paths of the various module files was not updated to skip it. This results in a failure because of a key error after the deprecation warning is displayed to user. This commit fixes the issue and adds a unit test for regression. Note that code for Spack chains has been updated accordingly but no unit test has been added for that case.
2019-10-04grpc: new package (#13054)Federico Ficarelli1-0/+43
* Add grpc@1.23.1 * Let version in url match actual one
2019-10-04llvm: update link to the document explaining codesign (#13047)Andreas Baumbach1-2/+2
Change-Id: I01242cbb43b0c62a659739a5d7e9d998dd27e794
2019-10-04Update the VTK-m package with better defaults and cuda corrections (#12850)Robert Maynard1-6/+16
2019-10-04superlu-dist: add openmp variant (#13052)Cody Balos1-0/+6
2019-10-04migrate: add zlib dependency. (#13039)Toyohisa Kameyama1-4/+8
* migrate: add zlib dependency. * flake8. * autotools related tools change to build.
2019-10-04LLVM 9.0.0 (#13050)Felix Thaler1-0/+16
2019-10-03fftw: simplify the recipe and make use of specific targets (#12889)Massimiliano Culpo1-123/+68
* fftw: grouped precisions in a single variant * fftw: simd options are now based on target features and not on variants * fftw: simplified computing the selected precisions
2019-10-03boost: Use gcc toolset for bootstrap with Fujitsu compiler. (#12876)t-karatsu1-1/+1
2019-10-03graphmap: add zlib dependency. (#13031)Toyohisa Kameyama1-0/+2
2019-10-03fastqvalidator: add zlib dependency and Removes erroneous deletes in ↵Toyohisa Kameyama2-0/+29
Chromosome (#13030)
2019-10-03hapcut2: add zlib dependency. (#13032)Toyohisa Kameyama1-0/+2
2019-10-03liblbxutil: Add zlib dependency. (#13033)Toyohisa Kameyama1-0/+1
2019-10-03metabat: Add zlib and ncurses dependency. (#13034)Toyohisa Kameyama1-0/+2
2019-10-03muse: add zlib dependency. (#13040)Toyohisa Kameyama1-0/+2
2019-10-03ngmlr: add zlib dependency. (#13041)Toyohisa Kameyama1-0/+2
2019-10-03fix ipykernel dependency, newer versions are python3-only (#13019)Andreas Baumbach1-2/+3
* fix ipykernel dependency, newer versions are python3-only * Update var/spack/repos/builtin/packages/py-ipykernel/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-ipykernel/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-10-03Update cctools to v7.0.18 (#13037)George Hartzell1-1/+2
- add version/checksum info for v7.0.18 - update checksum for v6.1.1 to use sha256, while I have the editor open...
2019-10-03updated manta checksum (#13038)Owen Solberg1-0/+1
2019-10-03Add py-flye 2.6 (#13025)Adam J. Stewart1-2/+13
2019-10-03Update compilers.yaml location in Getting Started docs (#13029)Adam J. Stewart1-11/+14
2019-10-03Add EasyBuild 4.0.0 (#13024)Adam J. Stewart4-18/+41
* Add EasyBuild 4.0.0 * Update homepage, remove no longer required deps * Replace version ranges with fixed versions
2019-10-03Update ECP Data & Vis SDK packages (#13027)Chuck Atkins2-23/+22
* ecp-io-sdk: Add faodel and sort variants * ecp-viz-sdk: Re-enable catalyst, sort variants, turn on by default * ecp-io-sdk and ecp-viz-sdk: Fix dependency variants
2019-10-03Generic x86_64 code compiled with GCC uses non deprecated mtune flags (#13022)Massimiliano Culpo2-6/+15
fixes #12928
2019-10-02Remove support for generating dotkit files (#11986)Massimiliano Culpo34-426/+121
Dotkit is being used only at a few sites and has been deprecated on new machines. This commit removes all the code that provide support for the generation of dotkit module files. A new validator named "deprecatedProperties" has been added to the jsonschema validators. It permits to prompt a warning message or exit with an error if a property that has been marked as deprecated is encountered. * Removed references to dotkit in the docs * Removed references to dotkit in setup-env-test.sh * Added a unit test for the 'deprecatedProperties' schema validator
2019-10-02added tasmanian version 7.0 to spack (#13003)Miroslav Stoyanov3-4/+52
2019-10-02New package: mapnik (#12708)Sinan1-0/+54
2019-10-02libint + cp2k: 2-stage build with 'tune' and 'fortran' variants (#12475)Tiziano Müller2-20/+128
* libint: switch to 2-stage build for 2.6.0+ * libint: add tune and fortran variants * cp2k: add support for libint >= 2.0 * cp2k: use pkg-config for linking libxc
2019-10-02cdhit: add zlib dependency. (#13015)Toyohisa Kameyama1-3/+7
* cdhit: add zlib dependency. * Add zlib variant.
2019-10-02denovogear: Add missing zlib depenbdency and fix open handling error. (#13017)Toyohisa Kameyama2-0/+15
2019-10-02cnpy: add zlib dependency. (#13016)Toyohisa Kameyama1-0/+2
2019-10-02Add cuda to paraview build. (#12996)Dan Lipsa1-1/+11
2019-10-02Singularity 3.4.1 still needs the makefile patch (#13008)George Hartzell1-1/+1
* Singularity 3.4.1 still needs the makefile patch * Constrain build patch to 3.4.0:3.4.1
2019-10-02new package: openldap (#12748)Sinan1-0/+92
* new package: openldap * fix mistake * remove template text * fix build error involving perl * flake8 * improvements * introduce multi valued variant for tls support * improve tls variant * overwrite build phase as opposed install * improve style
2019-10-02ants: missing zlib dependency and fix working directory in install. (#13010)Toyohisa Kameyama1-1/+6
2019-10-02breakdancer: missing ncurses dependency. (#13011)Toyohisa Kameyama1-0/+2
2019-10-02breseq: fix dependency and limit compiler version. (#13013)Toyohisa Kameyama1-1/+4
2019-10-02fujitsu compiler: Add 'required_libs'. (#13014)t-karatsu1-0/+2
2019-10-02update py-jupyter-notebook to use the real releases (#13020)Andreas Baumbach1-13/+9
* github releases are not released versions, but from-source releases * they lack the mimification of the JS/CSS components and as such require node-js and npm, this conflicts with python@3: * this commit * drops the from-source dependencies on node-js and npm and * updates the checksums to the correct sha256 hashes of the pypi releases. The pypi-tarballs are different
2019-10-02Replace expensive store.reindex() call with db.add() call. (#13021)Patrick Gartung1-1/+1
2019-10-01ZFP: CMake Package (#12999)Axel Huebl4-38/+65
* ZFP: CMake Package ZFP is primarily build via CMake, which will have all install logic and configuration files generated. The 0.5.0 release did not support this yet, so we toss it. * Patch ADIOS1: ZFP 0.5.1+ support * ZFP: Expose all CMake variants
2019-10-01'spack buildcache list' should show all buildaches available. (#13002)Patrick Gartung1-5/+1
* binary cache: show all packages for compatible differing targets * Don't restrict spack buildcache list to arch or os * Fix from merge conflict
2019-10-01direnv: add info for version 2.20.0 (#13007)George Hartzell1-0/+1
2019-10-01Add all compatible system types directory to module pathsMassimiliano Culpo4-3/+21
fixes #12915 closes #12916 Since Spack has support for specific targets it might happen that software is built for targets that are not exactly the host because it was either an explicit user request or the compiler being used is too old to support the host. Modules for different targets are written into different directories and by default Spack was adding to MODULEPATH only the directory corresponding to the current host. This PR modifies this behavior to add all the directories that are **compatible** with the current host.
2019-10-01new package: py-python-ldap (#12599)Sinan1-0/+24
* new package: py-python-ldap * fix dependency types * improvements * Update var/spack/repos/builtin/packages/py-python-ldap/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-python-ldap/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * add openldap dependency
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