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2020-07-08add public spack mirror (#17077)Peter Scheibel1-0/+2
2020-07-08new package: ligra (#17425)Sinan1-0/+44
* new package: ligra * setup run environment * tidy up * Update var/spack/repos/builtin/packages/ligra/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/ligra/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/ligra/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * flake8 Co-authored-by: Sinan81 <sbulut@3vgeomatics.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-07-08enable flatcc to be built with gcc@9.X.X (#17430)Frank Willmore1-0/+3
`gcc` 9 and above have more warnings that break the `flatcc` build by default, because `-Werror` is enabled. This loosens the build up so that we can build with more compilers in Spack. - [x] Add `-DFLATCC_ALLOW_WERROR=OFF` to `flatcc` CMake arguments Co-authored-by: Frank Willmore <willmore@anl.gov>
2020-07-08Buildcache: bindist test without invoking spack compiler wrappers. (#15687)Patrick Gartung8-9/+911
* Buildcache: * Try mocking an install of quux, corge and garply using prebuilt binaries * Put patchelf install after ccache restore * Add script to install patchelf from source so it can be used on Ubuntu:Trusty which does not have a patchelf pat package. The script will skip building on macOS * Remove mirror at end of bindist test * Add patchelf to Ubuntu build env * Revert mock patchelf package to allow other tests to run. * Remove depends_on('patchelf', type='build') relying instead on * Test fixture to ensure patchelf is available. * Call g++ command to build libraries directly during test build * Flake8 * Install patchelf in before_install stage using apt unless on Trusty where a build is done. * Add some symbolic links between packages * Flake8 * Flake8: * Update mock packages to write their own source files * Create the stage because spec search does not create it any longer * updates after change of list command arguments * cleanup after merge * flake8
2020-07-08Add missing file (#17426)iarspider1-0/+60
Co-authored-by: Ivan Razumov <ivan.razumov@cern.ch>
2020-07-08r-usethis: new version and dependencies (#17411)Amjad Kotobi1-1/+6
* r-usethis: new version and dependencies * r-usethis: fix in dependency
2020-07-08Ginkgo: new versions (#17413)tcojean2-0/+14
* Add new Ginkgo versions with HIP support. * Drop HIP support until more ROCm packages are integrated.
2020-07-08spack create: ask how many to download (#17373)Adam J. Stewart3-4/+8
2020-07-08typhon: fix build with Fujitsu compilers (#17424)ketsubouchi1-0/+4
2020-07-08ncl: fix compilation errors with Intel compilers (#17391)TZ1-1/+3
The Intel compilers are more strict and require special command line options (like -std=c99) to properly compile NCL.
2020-07-08Improve Travis sample in the docs (#17420)Simon Byrne1-3/+4
- printf is better than echo for multiline strings - ** should be && - use line continuation - Use multiline block
2020-07-07Fix YODA and Rivet recipes (#17412)iarspider2-6/+53
* Fix Rivet recipe; restrict Yoda versions for a give Rivet version * Fix YODA recipe * More tweaks to YODA version requirements * Flake-8
2020-07-07Relocate rpaths for all binaries, then do text bin replacement if the rpaths ↵Patrick Gartung1-7/+10
still exist after running patchelf/otool (#17418)
2020-07-07oneDNN: add v1.5.1 (#17419)Adam J. Stewart1-1/+2
2020-07-07GDAL: add v3.1.2 (#17416)Adam J. Stewart1-1/+2
2020-07-07CudaPackage: maintainers are listed in the docstring (#17409)Massimiliano Culpo1-1/+2
fixes #17396 This prevents the class attribute to be inherited and saves current maintainers from becoming the default maintainers of every Cuda package.
2020-07-07releases: document `releases/latest` tag (#17402)Todd Gamblin2-32/+61
We got rid of `master` after #17377, but users still want a way to get the latest stable release without knowing its number. We've added a `releases/latest` tag to replace what was once `master`. Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2020-07-07Uninstall: tolerate hook failures when force=true (#16513)Peter Scheibel1-2/+32
Fixes #16478 This allows an uninstall to proceed even when encountering pre-uninstall hook failures if the user chooses the --force option for the uninstall. This also prevents post-uninstall hook failures from raising an exception, which would terminate a sequence of uninstalls. This isn't likely essential for #16478, but I think overall it will improve the user experience: if the post-uninstall hook fails, there isn't much point in terminating a sequence of spec uninstalls because at the point where the post-uninstall hook is run, the spec has already been removed from the database (so it will never have another chance to run). Notes: * When doing spack uninstall -a, certain pre/post-uninstall hooks aren't important to run, but this isn't easy to track with the current model. For example: if you are uninstalling a package and its extension, you do not have to do the activation check for the extension. * This doesn't handle the uninstallation of specs that are not in the DB, so it may leave "dangling" specs in the installation prefix
2020-07-07votca-tools: fix build with mkl (#17414)Christoph Junghans1-1/+1
2020-07-07snappy: added v1.1.8 (#17397)Frank Willmore1-1/+2
2020-07-07jube: added v2.4.0 (#17404)g-mathias1-0/+1
Co-authored-by: lu64bag3 <gerald.mathias@lrz.de>
2020-07-07abseil-cpp: added v20200225.2 (#17383)figroc1-1/+2
2020-07-07libtree: fixed checksums (#17393)Harmen Stoppels1-3/+3
The hash was wrongly computed for the `tar.gz` that Github provides, not the custom tarball which includes submodules as well.
2020-07-07bliss: add spaces to __DATE__ (#17385)ketsubouchi1-0/+1
C++11 requires a space between literal and string macro.
2020-07-07mumax: new package at v3.10beta (#17398)Glenn Johnson1-0/+62
This PR creates a new spack package for mumax: GPU accelerated micromagnetic simulator. This uses the current beta version because - it is somewhat dated, ~2018 - it is the only one that supports recent GPU kernels
2020-07-07nco: added v4.8.[0,1] and v4.9.[0-3] (#17389)TZ1-0/+6
2020-07-07ncview: added v2.1.8 (#17388)TZ1-0/+1
2020-07-07gunrock: improved package recipe (added variants for applications and ↵Sinan1-3/+97
others) (#17340) Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com> Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
2020-07-06mpifileutils: add v0.10.1Adam Moody1-3/+4
2020-07-06bugfix: no infinite recursion in setup-env.sh on CrayTodd Gamblin3-0/+29
On Cray platforms, we rely heavily on the module system to figure out what targets, compilers, etc. are available. This unfortunately means that we shell out to the `module` command as part of platform initialization. Because we run subcommands in a shell, we can get infinite recursion if `setup-env.sh` and friends are in some init script like `.bashrc`. This fixes the infinite loop by adding guards around `setup-env.sh`, `setup-env.csh`, and `setup-env.fish`, to prevent recursive initializations of Spack. This is safe because Spack never shells out to itself, so we do not need it to be initialized in subshells. - [x] add recursion guard around `setup-env.sh` - [x] add recursion guard around `setup-env.csh` - [x] add recursion guard around `setup-env.fish`
2020-07-06docs: document releases and branches in SpackTodd Gamblin6-11/+405
- [x] Remove references to `master` branch - [x] Document how release branches are structured - [x] Document how to make a major release - [x] Document how to make a point release - [x] Document how to do work in our release projects
2020-07-06Remove references to `master` from CITodd Gamblin5-9/+5
- [x] remove master from github actions - [x] remove master from .travis.yml - [x] make `develop` the default branch for `spack ci`
2020-07-06change master/child to controller/minion in pty docstringsTodd Gamblin2-95/+97
PTY support used the concept of 'master' and 'child' processes. 'master' has been renamed to 'controller' and 'child' to 'minion'.
2020-07-06Fix gcc + binutils compilation. (#9024)cedricchevalier191-3/+1
* fix binutils deptype for gcc binutils needs to be a run dependency of gcc * Fix gcc+binutils build on RHEL7+ static-libstdc++ is not available with system gcc. Anyway, as it is for bootstraping, we do not really care depending on a shared libstdc++. Co-authored-by: Michael Kuhn <michael@ikkoku.de>
2020-07-06autotools bugfix: handle missing config.guess (#17356)Michael Kuhn1-2/+2
Spack was attempting to calculate abspath on the located config.guess path even when it was not found (None); this commit skips the abspath calculation when config.guess is not found.
2020-07-06Add Rivet and YODA (#17372)iarspider30-0/+1238
* Add Rivet and YODA * Add patches * Flake-8 * Set level for Rivet patches * Syntax fix * Fix dependencies of Rivet * Update var/spack/repos/builtin/packages/rivet/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-07-06esmf: set ESMF_COMM=intelmpi also for ^intel-mpi (#17387)TZ1-1/+1
Not only intel-parallel-studio+mpi provides Intel MPI but also intel-mpi.
2020-07-06psi4: fix "filter_compilers" signature (#17375)fcannini1-1/+4
2020-07-05GMT: add v6.1.0 (#17384)Adam J. Stewart2-2/+16
2020-07-05acl: fix depends error (#17341)darmac1-0/+4
2020-07-05brpc: fix depends issue (#17347)darmac1-0/+1
2020-07-05[opencascade] depends_on freetype, tcl, tk, gl (#17357)Wouter Deconinck1-0/+10
* [opencascade] depends_on freetype, tcl, tk, gl * [opencascade] new version 7.4.0p1 and url_for_version
2020-07-05New version of LHAPDF: 6.3.0 (#17367)iarspider1-0/+1
2020-07-05protobuf: add versions (#17381)figroc1-1/+6
2020-07-05amdblis bump to 2.2. (#17369)yellowhat1-0/+1
2020-07-05package Amber: amber tools 20 (#17374)g-mathias1-13/+30
* package amber: added amber_tools 20 hash; added minor version for amber_tools * fix flake8 issues Co-authored-by: lu64bag3 <gerald.mathias@lrz.de>
2020-07-05openblas: fix fj compiler support in 0.3.10 (#17376)Gilles Gouaillardet2-0/+14
The latest 0.3.10 version openblas changed how Fortran libraries are detected, and this broke Fujitsu compiler support. This (new) openblas patch addresses that issue.
2020-07-05update aspect to 2.2.0 (#17379)Timo Heister1-1/+4
2020-07-05SciPy: add v1.5.1 (#17380)Adam J. Stewart1-1/+2
2020-07-05inel-mpi: fix for wrong structure name instroduced in ea8a0be4 (#17382)TZ1-1/+1
it's mpi_compiler_wrappers and not mpi_compiler._wrappers fixes 2nd part of #17371