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2016-08-08Restore text output in verbose mode.Todd Gamblin1-0/+4
2016-08-08Make compiler command test last until caching is fixed.Todd Gamblin1-2/+3
2016-08-08Fix issues with import order in tests.Todd Gamblin1-15/+30
2016-08-08WIPTodd Gamblin3-27/+117
2016-08-08Fix iterator invalidation issues.Todd Gamblin1-10/+19
2016-08-08fix scoping issue.Todd Gamblin1-1/+1
2016-08-08rename `virtual` module to `provider_index`Todd Gamblin5-12/+16
2016-08-08Fix namespace support in Repo.get_pkg_class()Todd Gamblin2-2/+8
2016-08-08Faster key in FlagMap._cmp_keyTodd Gamblin1-2/+1
2016-08-08Remove vestigial methods from Package.Todd Gamblin1-38/+0
2016-08-08Add a ProviderIndex cache.Todd Gamblin3-13/+143
2016-08-08Make ProviderIndexes mergeable, so we can cache them per-repo.Todd Gamblin3-8/+57
2016-08-08Make ProviderIndex yaml-izable.Todd Gamblin4-13/+138
2016-08-08More compact YAML formatting for abstract specs.Todd Gamblin2-26/+27
2016-08-08Lazily evaluate all_package_names in repository.pyTodd Gamblin1-10/+17
2016-08-08Merge pull request #1472 from adamjstewart/fixes/rstripbecker331-1/+1
2016-08-08Only strip newline chars, not spacesAdam J. Stewart1-1/+1
2016-08-08Merge pull request #1345 from hartzell/feature/add-perl-dependency-to-gitbecker331-6/+6
2016-08-07Merge pull request #1449 from hartzell/feature/add-package-for-prankTodd Gamblin7-0/+304
2016-08-07Merge pull request #1463 from davydden/pkg/opiumTodd Gamblin1-0/+55
2016-08-07Merge pull request #1464 from hartzell/feature/update-lmodTodd Gamblin1-3/+5
2016-08-07Merge pull request #1465 from glennpj/pango_urlTodd Gamblin1-0/+2
2016-08-07Merge pull request #1466 from pramodk/developTodd Gamblin1-3/+5
2016-08-07tar: fix 1.28 on macOS; add 1.29 (#1462)Denis Davydov2-2/+494
2016-08-07Fix erroneously stripped trailing whitespace in patch (#1467)Adam J. Stewart1-4/+5
2016-08-07PDT should download full installer package pdtoolkit-X.tar.gz (default pdt-X....Pramod Kumbhar1-3/+5
2016-08-06Add list_url to pango packageGlenn Johnson1-0/+2
2016-08-06No need to patch Lmod after 6.4.4George Hartzell1-3/+5
2016-08-06Make configure use our gettext libraryGeorge Hartzell1-0/+1
2016-08-06Clean up rebase problemsGeorge Hartzell1-1/+1
2016-08-06[Whitespace] Gather the depends_on's together.George Hartzell1-0/+1
2016-08-06Call configure `--with-libpcre=...` to use our pcreGeorge Hartzell1-1/+1
2016-08-06Enable depends_on('pcre') alsoGeorge Hartzell1-3/+1
2016-08-06Add depends_on('perl') to git packageGeorge Hartzell1-3/+3
2016-08-06Switch to using *std_cmake_argsGeorge Hartzell4-7/+4
2016-08-06Flake8 whitespace cleanupGeorge Hartzell4-4/+8
2016-08-06Add Bio++ tool suite and supporting libsGeorge Hartzell4-0/+173
2016-08-06Add package for mafftGeorge Hartzell1-0/+42
2016-08-06Add package for exonerateGeorge Hartzell1-0/+44
2016-08-06Fix name of bpp-suite (missing -...)George Hartzell1-1/+1
2016-08-06Add package for prankGeorge Hartzell1-0/+44
2016-08-06opium: add new packageDenis Davydov1-0/+55
2016-08-05Merge pull request #1451 from hartzell/feature/add-package-for-fastx_toolkitbecker332-0/+83
2016-08-05Merge pull request #1452 from hartzell/feature/add-package-for-samtoolsbecker334-29/+101
2016-08-05Remove lingering FIXME commentaryGeorge Hartzell1-3/+0
2016-08-05Samtools depends on htslib from 1.3.1 onwardGeorge Hartzell1-2/+2
2016-08-05Merge pull request #1460 from glennpj/fix_list_vcsbecker331-8/+12
2016-08-05Merge pull request #1453 from hartzell/feature/add-package-for-seqtkbecker331-0/+43
2016-08-05Merge pull request #1450 from hartzell/feature/add-package-for-bwabecker331-0/+52
2016-08-05Catch error for version in VCSGlenn Johnson1-8/+12
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