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2016-07-31New package - r-datatableGlenn Johnson2-0/+87
Extension of Data.frame
2016-07-30Merge pull request #1384 from epfl-scitas/qa/drop_flake8_python26Todd Gamblin2-11/+34
qa : no flake8 on python 2.6, coveralls only on python 2.7
2016-07-30Merge pull request #1396 from glennpj/r-quantmodTodd Gamblin2-0/+90
New package - r-quantmod
2016-07-30Merge pull request #1395 from glennpj/r-ggmapTodd Gamblin8-0/+375
New package - r-ggmap and dependencies
2016-07-30Merge pull request #1394 from glennpj/r-mapsTodd Gamblin1-0/+42
New package - r-maps
2016-07-30Merge pull request #1393 from glennpj/r-maptoolsTodd Gamblin1-0/+49
New package - r-maptools
2016-07-30Merge pull request #1391 from glennpj/r-caretTodd Gamblin1-0/+50
New package - r-caret
2016-07-30Merge pull request #1390 from glennpj/r-glmnetTodd Gamblin1-0/+49
New package - r-glmnet
2016-07-30Merge pull request #1389 from glennpj/r-vcdTodd Gamblin2-0/+95
New package - r-vcd
2016-07-30Merge pull request #1388 from glennpj/r-multcompTodd Gamblin5-0/+226
New package - r-multcomp
2016-07-30Merge pull request #1387 from glennpj/r-randomforestTodd Gamblin1-0/+42
New package r-randomforest
2016-07-30Merge pull request #1386 from glennpj/r-carTodd Gamblin11-0/+510
New package r-car
2016-07-30New package - r-quantmodGlenn Johnson2-0/+90
Qualitative Financial modelling framework.
2016-07-30New package - r-ggmap and dependenciesGlenn Johnson8-0/+375
Spatial visualization with ggplot2
2016-07-30New package - r-mapsGlenn Johnson1-0/+42
Draw geographical maps.
2016-07-30New package - r-maptoolsGlenn Johnson1-0/+49
Tools for reading and handling spatial objects.
2016-07-30New package - r-caretGlenn Johnson1-0/+50
Classification and Regression Training
2016-07-30New package - r-glmnetGlenn Johnson1-0/+49
Lasso and Elastic-Net Regularized Generalized Linear Models
2016-07-30New package - r-vcdGlenn Johnson2-0/+95
Visualizing Categorical Data
2016-07-30New package - r-multcompGlenn Johnson5-0/+226
Simultaneous Inference in General Parametric Models.
2016-07-30New package r-randomforestGlenn Johnson1-0/+42
Breiman and Cutler's Random Forests for Classification and Regression.
2016-07-30Have R extensions build in parallel.Glenn Johnson1-0/+4
Set `MAKEFLAGS` so R extensions can be built in parallel if that is set in spack.
2016-07-30New package r-carGlenn Johnson11-0/+510
Companion to Applied Regression.
2016-07-30qa : fixes #1370 (no flake8 on python 2.6, coveralls only python 2.7)alalazo2-11/+34
2016-07-30Invokes subshell without user init scripts.Matt Belhorn1-1/+2
2016-07-29Replaces technique for obtaining default back_end target.Matt Belhorn1-8/+29
New technique parses output of `module list` in clean login environment in order to let convoluted initialization scripts to work for us rather than against us as when trying to parse them directly.
2016-07-29Obtains default modules from a clean subshell.Matt Belhorn1-8/+29
The list of default environment modules is obtained by calling `module list -lt` from a subshell with a wiped environment. This allows `/etc/profile` and other init scripts to be fully sourced which should generally include loading the default modules. The list of default modules is then parsed for the first acceptable CPU target, assumed to be the back_end target.
2016-07-29GTK+3: Provide updates to package dependencies.Kelly (KT) Thompson5-5/+49
WIP: I started trying to build gtkplus@3.20, but this package has many more dependencies than v2 and it requires newer versions of existing packages. This commit provides updates for 5 packages that are required by GTK+3. This is not the complete set of changes required for GTK+3. atk - move default version from 2.14 -> 2.20. glib - move default version from 2.42 -> 2.49 - v2.49 requires pcre+utf as a new dependency. pcre - if variant +utf is selected, add '--enable-unicode-properties' to the configure options. libepoxy - new package to spack - manages OpenGL function pointers. pango - move default version from 1.36 -> 1.40
2016-07-29mkl: flake8 fixes; minor docu updateDenis Davydov1-5/+5
2016-07-29Use space characters to separate preferred variants from package name and ↵Paul Hopkins1-2/+2
each other
2016-07-29trilinos: make sure hdf5 is picked up from SpackDenis Davydov1-3/+10
2016-07-29trilinos: fix lapack lib dirDenis Davydov1-1/+1
2016-07-29hypre: minor cleanup related to blas/lapackDenis Davydov1-2/+2
2016-07-29mkl: symlink libs to prefix.libDenis Davydov1-0/+8
2016-07-28Merge pull request #1344 from LLNL/bugfix/py-nose-nosetestsTodd Gamblin1-1/+1
do not ignore nosetests script in py-nose
2016-07-28Merge pull request #1331 from adamjstewart/fixes/mvapich2becker331-0/+1
MVAPICH2 depends on libpciaccess
2016-07-27Merge pull request #1235 from davydden/pkg/p4est_run_testsbecker331-22/+18
p4est: use run_tests instead of a variant
2016-07-27Merge pull request #1 from robertdfrench/olcf/unified_cray_platformMatt Belhorn2-16/+18
PEP8 Goodness
2016-07-27PEP8 Goodnessrobertdfrench2-16/+18
2016-07-27Front-end unification for Cray systems.Matt Belhorn1-0/+87
A platform to generically cover all Cray systems is introduced to avoid having specific platforms for each of XK (XE, XT), XC, and future systems using CrayPE and CNL. The platform searches for 'front_end' and 'back_end' targets, in order, from: * Environment variables 'SPACK_FRONT_END' and 'SPACK_BACK_END' * A spack configuration file 'targets.yaml' * Parsing `/etc/bash.bashrc.local` for first loaded CrayPE CPU target. If a back_end target is not found through one of these methods, an exception is raised. Otherwise, the back_end is set as the default target. The shell init script search is based on recommendations in Crayports case #144359. No automagic way of determining front_end targets has been found (to date) so if a front_end is not specified through configuration, it is ignored which should leave a spack instance in a consistant state.
2016-07-27Add package for treeGeorge Hartzell1-0/+46
Add a package for [tree](http://mama.indstate.edu/users/ice/tree/). It has a Makefile that hardcodes a prefix and some CFLAGS. Used filter_file to: - set the make variable *prefix* to `prefix`; and - comment out their CFLAGS, just use ours.... It installs, runs on CentOS7, and uninstalls cleanly.
2016-07-27Adds __str__ method to CNL operating system class.Matt Belhorn1-0/+2
2016-07-27Adds targets config fileMatt Belhorn1-0/+13
2016-07-27Merge pull request #1350 from adamjstewart/fixes/opensslTodd Gamblin1-1/+1
Fix OpenSSL url_for_version
2016-07-26modules : handle dashes in environment variablesalalazo1-1/+1
2016-07-25intel parallel studio itac fixesGreg Lee1-1/+7
2016-07-25intel parallel studio setup mkl environmentGreg Lee1-0/+25
2016-07-25Merge pull request #1353 from epfl-scitas/qa/minor_cleanupbecker332-53/+39
qa : minor cleanup
2016-07-25Added libhio packageSamuel Knight1-0/+45
2016-07-25Merge pull request #1352 from glennpj/r_googlevisbecker331-0/+47
New package - r-googlevis
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