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New packages - R htmlwidgets
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Add dependency type to r- packages
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With the addition of dependency types and with `py-setuptools` set as
type='build' there are more packages that need to have `py-setuptools`
added as a dependency.
This PR adds that dependency for the following packages:
- py-h5py
- py-networkx
- py-pytables
- py-scikit-image
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It looks like the docs for copy_tree were cut/paste from copy and still referred to installing a "file".
This fixes that.
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This updates to the 1.0 version of r-curl. The remote archive directory
name also changed so change that here as well.
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In addition to `list_url` make sure the package has the `url` attribute
set before attempting to add urls from a list. This is to cover the case
where there may be a `list_url` specified in tandem with a
`url_for_version`.
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This commit will make urls from list_url only checked if `list_url` is
set in the package file. This makes more sense as there is no need to
check for those if the attribute is not present. If `url` is present and
`list_url` is not then it would result in the same url. If
`url_for_version` is used then that will not work anyway.
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This PR adds the `nolink` dependency type to r- package dependencies.
This is needed due to the new dependency types in Spack. A couple of
packages were updated with new versions as well.
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Fixed the flake 8 errors that involved too many blank lines or not
enough blank lines. Basically, all of the flake8 errors except line
length errors.
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This PR allows archive file retrieval from urls derived from the
`list_url` setting in a package file. This allows for continued
retrieval of checksummed archive files even when they are moved to a new
remote location when a package is updated upstream.
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This commit introduces a mechanism to insure that R package dependencies
are built with the Spack compiler wrapper. A copy of Makeconf is made
before `filter_compilers` is called. This is then pointed to by the
R_MAKEVARS_SITE environment variable set up in
`setup_dependent_environment`. With this the normal compilers are used
outside of spack and the spack wrapper compilers are used inside of
spack.
This commit also standardizes on the `join_path` call. It also sets the
commented build command to reflect what is actually used with the newer
string formatting.
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Use example deptypes in newly created packages
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Enhancement Proposal: Make Python Spack Installs Ignore User Configuration
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Fix alpha case of dependencies for some r-packages
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Add URL and md5 for jdk-8u92.
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A while ago I was asked to convert packages to all lowercase. That was
done but some dependencies did not get converted in the specification.
This commit fixes that as well as a couple of urls that need to be made
explicit and a missing dependency on jdk.
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Remove remote website pinging from OpenSSL
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Update gcc package with info about gcc-5.4.0
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- OpenSSL no longer checks remote versions on the openssl site.
- Spack is used on systems that aren't connected to the internet, and
this check is probably in the wrong place and affects too many
commands. We can work on figuring out a better, more configurable
place to put a check like this.
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The lmod package should depend_on('tcl')
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Crayxc detection
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wrapper will remove them from the environment (prevents hang)
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Lmod's configure script goes to the trouble of finding
tclsh. This change uses that info to rewrite the #! lines
in the tcl scripts so that they call the tclsh that the
configure script discovered.
It needs to massage the existing shebang lines into something
that the sed statement in the makefile can manipulate and
it needs to add the path_to_tclsh info into the set of sed
statements.
Checked with versions 6.4.1 and 6.3.7 (the checksum for 6.0.1 is
incorrect, a fix for another time).
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lmod uses tclsh at runtime, so adjust the depends_on accordingly
(thanks @davydden!).
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The lmod package needs a tclsh. Up until now it just assumed
that one was available on the system.
This change adds a depends_on('tcl') to the lmod package.
The tcl package installs a tclsh script with an embedded version
number (e.g. tclsh8.6) but the lmod configuration looks for tclsh.
This change extends the tcl package to symlink tclshX.Y to tclsh in
the tcl package bin directory.
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paulhopkins/bugfix/github1196-specify-preferred-variants
Bugfix/github1196 specify preferred variants
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Fix recursive module loading
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Update documentation for recursive module loading
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