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2022-07-29OpenGL restructure (#31748)Chuck Atkins20-327/+418
* OpenGL: Restructures the OpenGL packages This provides concrete glx and osmesa packages which delegate to virtual libglx and libosmesa packages provided by mesa. This was necessary because GLX and OSMesa both provide gl implementations but with mesa providing the girtual gl package there was no way to properly distinguish which of the two opengl implementations was beiing requested when querying the spec['gl'] dependency. This additional level of indirection allows for that. * OpenGL: Adjust downstream dependents of OpenGL for the restructure This implements the necessary fixes in the packages that depend on OpenGL to work with the restructuring. This also attempts to create a consistent variant for specifying glx or osmesa.
2022-07-29e4s oneapi ci: uncomment parallel-netcdf (#31804)eugeneswalker1-2/+1
2022-07-29vdt: add missing python dependency (#31795)Seth R. Johnson1-4/+8
* vdt: add missing python dependency * vdt: fix dependency and add explicit exe path
2022-07-29gaudi: new version 36.6 (#31799)Wouter Deconinck1-2/+3
No build system changes. Changelog at https://gitlab.cern.ch/gaudi/Gaudi/-/tags/v36r6, comparison at https://gitlab.cern.ch/gaudi/Gaudi/-/compare/v36r5...v36r6
2022-07-29iwyu: new version 0.18 (#31798)Seth R. Johnson1-0/+2
2022-07-29e4s ci: add oneapi stack (#31781)eugeneswalker2-0/+503
* e4s ci: add oneapi stack * shorten padded_length to 256 * comment out pdt and add failure note
2022-07-28Deprecate visit 3.3.0 because it is broken (#31790)Scott Wittenburg1-1/+1
2022-07-28Dyninst: add version 12.2.0 (#31789)Tim Haines1-0/+1
2022-07-28new package: r-signac (#31703)Glenn Johnson2-0/+69
Also includes new package depdendency for r-rcpproll.
2022-07-28New package: trexio (#31769)Evgeny Posenitskiy1-0/+46
* [WIP] first working Spack spec for TREXIO * add patch to prepend -lhdf5_hl to LIBS * Fix spack stype issues * trexio: Fix hashes and hdf5 variant build * trexio: Remove import from Spack * trexio: Fix the isort error * Apply suggestions from code review By @tldahlgren Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com> Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-07-28sentieon-genomics: update version to 202112.05 (#31788)snehring1-0/+1
2022-07-28environment.py: only install root specs explicitly (#31645)Harmen Stoppels2-3/+6
2022-07-28Cabana: add test variants (#31776)Sam Reeve1-20/+16
* Simplify Cabana build flags * Add unit tests, examples, and performance options
2022-07-28py-rsatoolbox: add 0.0.4 (#31785)Manuela Kuhn2-0/+24
2022-07-28New version of Arbor package (#31660)Brent Huisman1-50/+76
2022-07-28gcc: fix unstable patch urls (#31784)Harmen Stoppels5-6/+514
the patch urls dynamically generate a diff, which includes metadata about the git version used, meaning they are not content-addressable. instead ship the patches with spack.
2022-07-28Adding NVIDIA HPC SDK 22.7 (#31770)Filippo Spiga1-0/+4
2022-07-28Fix parsing of clean_url (#31783)Stephen Sachs1-2/+2
In #31618 the idea was to determine the file extension heuristically by dropping query params etc from a url and then consider it as a file path. That broke for URLs that only have query params like http://example.com/?patch=x as it would result in empty string as basename. This PR reverts to the old behavior of saving files as ?patch=x in that case. Co-authored-by: Stephen Sachs <stesachs@amazon.com>
2022-07-28mpitrampoline: New version 5.0.1 (#31772)Erik Schnetter1-0/+2
2022-07-27Adding Flamemaster product (#31126)AMD Toolchain Support1-0/+281
* Adding Flamemaster product About FlameMaster: Flamemaster is an open source C++ program package for 0D combustion and 1D laminar flame calculations. * Addressed review comments and style tests errors * Addressed style tests errors * Incorporated spack style of coding * Fixed following spack style error [E228] missing whitespace around modulo operator * Update package.py addressing style issues * Update package.py * Changes to maintainers entry
2022-07-27e4s ci: add slate +rocm (#31602)eugeneswalker1-0/+1
2022-07-27c-blosc2: New version 2.2.0 (#31577)Erik Schnetter1-0/+3
2022-07-27New ExaCA package (#31777)Sam Reeve1-0/+43
2022-07-27Add Caliper v2.8.0 and rocm support (#31632)David Boehme1-18/+23
* Add Caliper v2.8.0 * Add conflict for +rocm+cuda
2022-07-27lcio, podio, edm4hep: Add latest versions (#31749)Thomas Madlener3-0/+4
* lcio: add latest version * edm4hep: Add latest versions * podio: Add latest versions
2022-07-27ZSH: add lmod and local etc variants (#29651)Andrew-Dunning-NNL1-4/+32
* zsh: add lmod and local etc support * zsh: fix indentation
2022-07-27VisIt: Update to VisIt 3.3.0. (#31654)Eric Brugger2-2/+24
2022-07-27WarpX: Add sensei insitu variant (#31542)kwryankrattiger1-5/+13
2022-07-27dd4hep: add v1.21 (#31705)Valentin Volkl1-0/+1
2022-07-27herwig3, thepeg: correct lhapdfsets dependency, specify boost libs (#31744)Valentin Volkl2-13/+3
* herwig3: change lhapdfsets dependency type to build These data sets are needed for a check during build, but due to the difficulty of versioning the datasets it is preferred not to keep the them in the run environment. * herwig3: explicitly state needed boost libs * thepeg: explicitly state needed boost libs * style * stylestyle
2022-07-27py-scipy: -fPIC appending trouble with gcc@10: (#31698)Pitamila1-0/+2
`-fPIC` mandatory option squeezed by error, the NPY_DISTUTILS_APPEND_FLAGS appears handy Co-authored-by: duperrayp <duperrayp@u-un00s16835>
2022-07-27Tau must get GCC path from environment on Cray (#31751)wspear1-0/+6
* Tau must get GCC path from environment on Cray self.compiler doesn't provide the path to the gcc compiler when using cray cc and the spack internal compiler overrides the location in PATH. If possible get the location from the GCC_PATH variable instead. * Fix flake8 issues * Update package.py
2022-07-27Update omnitrace package with v1.3.0 (#31754)Jonathan R. Madsen1-5/+9
2022-07-27py-sphinx: add v5.1.1 (#31756)Adam J. Stewart1-0/+1
2022-07-27tixi: new versions (#31761)Melven Roehrig-Zoellner1-0/+3
2022-07-27valgrind: new version (#31762)Melven Roehrig-Zoellner1-0/+1
2022-07-27itensor: new version, restrict hdf5 to :1.10 (#31764)Melven Roehrig-Zoellner1-1/+2
2022-07-26curl: 7.84.0 (#31725)Harmen Stoppels1-0/+1
2022-07-26cabana: add cajita variant (#31753)eugeneswalker1-0/+5
* cabana: add cajita variant * Update var/spack/repos/builtin/packages/cabana/package.py Co-authored-by: Sam Reeve <6740307+streeve@users.noreply.github.com> * cabana: cannot build +cajita ~mpi Co-authored-by: Sam Reeve <6740307+streeve@users.noreply.github.com>
2022-07-26e4s ci stack: add spec: hdf5-vol-async (#31747)eugeneswalker2-0/+3
* e4s ci stack: add spec: hdf5-vol-async * hdf5-vol-async: add e4s tag
2022-07-26mpich@4.0.2 %oneapi: patch config.rpath (#31740)eugeneswalker2-0/+33
2022-07-26openmpi: +pmi implies schedulers=slurm (#31722)Harmen Stoppels1-2/+2
2022-07-26libjwt: new versions, missing dep, disable examples (#31723)Harmen Stoppels1-0/+6
2022-07-26jansson: new version, disable docs (#31724)Harmen Stoppels1-4/+6
We don't have the build deps for the docs, so disable for now.
2022-07-26json-c: 0.16 (#31726)Harmen Stoppels1-0/+1
2022-07-26munge: 0.5.15 (#31727)Harmen Stoppels1-0/+1
2022-07-26libgcrypt: bump (#31728)Harmen Stoppels1-0/+2
2022-07-26libgpg-error: bump (#31729)Harmen Stoppels1-0/+2
2022-07-26gnupg: bump and deprecate over cve (#31730)Harmen Stoppels1-18/+20
2022-07-26environment.py: reduce # of locks further (#31643)Harmen Stoppels2-27/+49
* environment.py: reduce # of locks further
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