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2022-09-06Upgrade py-kosh to 2022-08-10 version. (#32541)Robert Blake1-0/+1
2022-09-06quantum-espresso: add cuda support (#31869)Laura Bellentani1-12/+43
2022-09-06py-tensorflow: add v2.7.4, v2.8.3, v2.9.2 (#32500)Adam J. Stewart1-0/+3
* py-tensorflow: add v2.7.4 * py-tensorflow: add v2.8.3 * py-tensorflow: add v2.9.2
2022-09-06update libflame for work with crayCC, craycc, ... (#32533)luker1-1/+1
update libflame for work with crayCC, craycc, crayftn compiler wrappers. These lightweight compiler drivers do not add the `-L<lib_path>` like the CC/cc/ftn compiler drivers do. I've made a slight change to add the lib directories.
2022-09-06Fix spack locking on some NFS systems (#32426)Seth R. Johnson1-2/+6
Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2022-09-06Mark a test xfail on Python 2.7 (#32526)Massimiliano Culpo1-0/+3
refers #32470
2022-09-04rocthrust: add amdgpu_target and spack build test (#31203)Cory Bloor1-2/+14
This change adds support for building the rocthrust tests and adds the `amdgpu_target` variant to the `rocthrust` package. - [x] rocthrust: add amdgpu_target and spack build test - [x] Drop numactl as it is not a direct dependency
2022-09-02Apply hip workaround for raja-framework (#32469)Tom Scogland3-2/+29
* add workaround for broken behavior in HIP Hip has a longstanding cmake issue where they calculate include paths incorrectly, this works around it for raja and adds an explicit rocprim dependency. * propagate openmp requirement and workaround to camp * refactor and include umpire * propagate openmp option to camp in umpire and use main camp for main and develop raja and umpire * bump camp to new patch release
2022-09-02Reorder workflow execution in GHA (#32183)Tom Scogland8-245/+367
This patchset refactors our GitHub actions into a single top-level ci workflow that invokes a series of reusable actions. The main goal of this is to be able to easily control which tests run and in what order based on the success or failure of top-level prechecks. Our previous workflows ran in three sets: * nix tests: style and verification first, then linux and macos tests if successful * windows tests: style and verification first, then linux and macos tests if successful * bootstrap tests As a result, the bootstrap tests ran even if the style failed, and style and verification had to run on two different platforms despite running identical checks. I'm relatively sure that's because of the limitation on dependencies between steps in the jobs. Reusable workflows allow us to run the style, verification and now audit checks once, then depending on the results, and the files changed, run the appropriate nix, windows and bootstrap tests. While it saves only a few minutes by itself, this makes it easier to refactor checks to subset tests without having to replicate tests or other workflow components in the future. Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-09-02Update bootstrap buildcache to v0.3 (#32262)Harmen Stoppels7-16/+91
This release allow to bootstrap patchelf from binaries.
2022-09-02[CURL] New version. (#32481)Timothy Brown1-0/+1
Adding a new version of curl. This addresses issue [9081](https://github.com/curl/curl/issues/9081).
2022-09-02tree: add 2.0.3 (#32463)Alex Hedges1-1/+8
Fix GCC compiler warnings due to not using C99 mode CC should be overriden with Spack's value, and the other flags needed to be copied from the Makefile.
2022-09-01meson: add maintainer (#32460)Adam J. Stewart3-1/+5
2022-09-01py-pytorch-lightning: add v1.7.4 (#32464)Adam J. Stewart1-0/+1
2022-09-01Fix cause of checksum failures in public binary mirror (#32407)Scott Wittenburg4-49/+119
Move the copying of the buildcache to a root job that runs after all the child pipelines have finished, so that the operation can be coordinated across all child pipelines to remove the possibility of race conditions during potentially simlutandous copies. This lets us ensure the .spec.json.sig and .spack files for any spec in the root mirror always come from the same child pipeline mirror (though which pipeline is arbitrary). It also allows us to avoid copying of duplicates, which we now do.
2022-09-01Upgrade version from 0.7.0-beta to 0.8.0-beta. (#32442)H. Joe Lee1-2/+2
The version 0.8.0-beta is released.
2022-09-01Add: py-sphinx-design (#32482)Axel Huebl1-0/+21
* Add: py-sphinx-design Needed for #32480
2022-09-01Backport fix for buliding vtk-m diy with GCC 11 (#32465)kwryankrattiger2-0/+27
2022-09-01New command, `spack change`, to change existing env specs (#31995)Peter Scheibel8-4/+273
If you have an environment like ``` $ cat spack.yaml spack: specs: [openmpi@4.1.0+cuda] ``` this PR provides a new command `spack change` that you can use to adjust environment specs from the command line: ``` $ spack change openmpi~cuda $ cat spack.yaml spack: specs: [openmpi@4.1.0~cuda] ``` in other words, this allows you to tweak the details of environment specs from the command line. Notes: * This is only allowed for environments that do not define matrices * This is possible but not anticipated to be needed immediately * If this were done, it should probably only be done for "named"/not-anonymous specs (i.e. we can change `openmpi+cuda` but not spec like `+cuda` or `@4.0.1~cuda`)
2022-09-01root: apply 6.26 COMPILE_DEFINITIONS patch unconditionally (#32472)Graeme A Stewart1-2/+3
This bug isn't per-se tied to the root7 variant and should be applied always for these ROOT releases
2022-09-01amrex: add v22.09 (#32477)Weiqun Zhang1-1/+2
2022-09-01Fix CI for package only PRs (#32473)Massimiliano Culpo2-2/+2
2022-09-01use bash for autoreconf (#32466)Jordan Ogas1-1/+1
2022-09-01Port package sanity unit tests to audits (#32405)Massimiliano Culpo6-318/+222
2022-08-31meson: add 0.63.1 (#32441)Michael Kuhn1-0/+1
2022-08-31perl-bignum: Adding perl module (#31590)marcost28-0/+139
2022-08-31py-black: add v22.8.0 (#32468)Adam J. Stewart1-6/+7
2022-08-31gdk-pixbuf: only build tests when requested (#32452)Wouter Deconinck1-0/+3
The building of tests is optional [as of 2.42.9](https://gitlab.gnome.org/GNOME/gdk-pixbuf/-/commit/801eef111df624f4377baed9a90c94b6a2d4340c). This applies this option in the build. The reason the option was added was to deal with test build failures in sandboxed environments and with certain glibc versions (caused by glib gresources). For example, with the latest version glibc and in the latest version of docker these tests [cannot be built](https://github.com/moby/moby/issues/43595).
2022-08-31py-pandas: add v1.4.4 (#32459)Adam J. Stewart1-0/+2
2022-08-31llvm: fix 15.0.0rc builds on MacOS with command-line-tools (#32397)Satish Balay1-5/+18
* llvm: fix 15.0.0rc builds on MacOS with command-line-tools Ref: https://github.com/llvm/llvm-project/issues/57037 i.e use -DBUILTINS_CMAKE_ARGS=-DCOMPILER_RT_ENABLE_IOS=OFF. But this needs switching "compiler-rt" from "projects" to "runtimes". Also fixing the warnings below fixes compile errors CMake Warning at CMakeLists.txt:101 (message): Using LLVM_ENABLE_PROJECTS=libcxx is deprecated now, please use -DLLVM_ENABLE_RUNTIMES=libcxx or see the instructions at https://libcxx.llvm.org/BuildingLibcxx.html for building the runtimes. CMake Warning at CMakeLists.txt:101 (message): Using LLVM_ENABLE_PROJECTS=libcxxabi is deprecated now, please use -DLLVM_ENABLE_RUNTIMES=libcxxabi or see the instructions at https://libcxx.llvm.org/BuildingLibcxx.html for building the runtimes. CMake Warning at CMakeLists.txt:101 (message): Using LLVM_ENABLE_PROJECTS=libunwind is deprecated now, please use -DLLVM_ENABLE_RUNTIMES=libunwind or see the instructions at https://libcxx.llvm.org/BuildingLibcxx.html for building the runtimes. /private/var/folders/nt/_m1t_x7j76q6sl3xt91tqgs00000gn/T/balay/spack-stage/spack-stage-llvm-15.0.0-rc2-h2t5bohzyy7exz2ub3m42pfycjcmbndk/spack-build-h2t5boh/include/c++/v1/cstdlib:135:9: error: no member named 'at_quick_exit' in the global namespace using ::at_quick_exit _LIBCPP_USING_IF_EXISTS; ~~^ * Update var/spack/repos/builtin/packages/llvm/package.py Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com> Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-08-31ASP-based solver: allow to reuse installed externals (#31558)Massimiliano Culpo4-31/+146
fixes #31484 Before this change if anything was matching an external condition, it was considered "external" and thus something to be "built". This was happening in particular to external packages that were re-read from the DB, which then couldn't be reused, causing the problems shown in #31484. This PR fixes the issue by excluding specs with a "hash" from being considered "external" * Test that users have a way to select a virtual This ought to be solved by extending the "require" attribute to virtual packages, so that one can: ```yaml mpi: require: 'multi-provider-mpi' ``` * Prevent conflicts to be enforced on specs that can be reused. * Rename the "external_only" fact to "buildable_false", to better reflect its origin
2022-08-31py-breathe: add new version and improve version constraints (#31857)Seth R. Johnson1-1/+5
* py-breathe: add new version and improve version constraints * py-breathe: everyone loves versions ``` py-breathe, py-breathe in the air don't be afraid to care ```` * Update var/spack/repos/builtin/packages/py-breathe/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * add comment Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-08-31hdf5-vol-log: Update package versions and update HDF5 dependency to version ↵Larry Knox1-2/+4
1.13.2 (#32448) * Add HDF5 version 1.13.2. Remove HDF5 versions 1.13.0 and 1.13.1. * Correct formatting. * Update vol-log-based versions and HDF5 dependency version.
2022-08-31bdw-gc: add v8.2.2 (#32453)Ivan Maidanski1-1/+2
2022-08-30py-gpytorch: add v1.9.0 (#32445)Adam J. Stewart2-2/+29
2022-08-30py-kornia: add v0.6.7 (#32447)Adam J. Stewart1-0/+1
2022-08-30Environments: Add support for include URLs (#29026)Tamara Dahlgren22-221/+919
* Preliminary support for include URLs in spack.yaml (environment) files This commit adds support in environments for external configuration files obtained from a URL with a preference for grabbing raw text from GitHub and gitlab for efficient downloads of the relevant files. The URL can also be a link to a directory that contains multiple configuration files. Remote configuration files are retrieved and cached for the environment. Configuration files with the same name will not be overwritten once cached.
2022-08-30New package: py-mkdocstrings-python (#32421)Ryan Marcellino1-0/+21
2022-08-30added STAT 4.2.0 and updated deps (#32385)Gregory Lee3-3/+13
* added STAT 4.2.0 and updated deps * launchmon package fix and style fixes * launchmon package fix * Update var/spack/repos/builtin/packages/launchmon/package.py Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com> Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-08-30libatomic_ops: add v7.6.14 (#32418)Ivan Maidanski1-1/+2
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-08-30libxml2: fix building with nvhpc (#32440)Harmen Stoppels2-36/+1
2022-08-30root: new bugfix version 6.26.06 (#32230)Wouter Deconinck1-0/+13
2022-08-30oprnmx: fix to build with Fujitsu compiler. (#32389)Toyohisa Kameyama1-1/+1
2022-08-30coreutils: add support for external find (#32414)Olivier Cessenat1-0/+10
2022-08-30hipsycl: fix building on OSX. Patch boost to be backward-compatible. (#31311)David M. Rogers1-3/+7
Co-authored-by: frobnitzem <frobnitzem@users.noreply.github.com>
2022-08-30scorep: modify configure flags for Cray platforms (#32201)luker1-2/+4
2022-08-30visit: actually set the dev env for plugins again (#32427)Olivier Cessenat1-1/+4
2022-08-30esmf: update package for cce (cray) compiler (#32433)Jim Edwards2-4/+27
2022-08-29Initial commit for freesurfer package (#32395)robgics1-0/+40
* Initial commit for freesurfer package * Add myself as maintainer * Change URLs to https and move url function to proper place.
2022-08-29snphylo: update to new version (#32425)snehring1-2/+5