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2016-12-01likwid: add new package (#2455)Denis Davydov1-0/+61
2016-12-01Merge pull request #2364 from davydden/ips_mklGregory Lee1-1/+1
intel-parallel-studio: fix location of MKL libs
2016-11-30Update R&friends to use our X11 libs (#2053)George Hartzell3-0/+17
* Update R&friends to use our X11 libs Add `depends_on()`'s for R, Cairo, and Tk so that they use the Spack X bits. * Conditionalize X stuff on variant Another step towards hooking up the X stuff. There's still discussion happening on the issue, but this is better than the 'everything must build with X' state that it was in.
2016-11-29Allow shell support to work when set -u is set (#2418)Adam J. Stewart1-1/+1
2016-11-29New package - r-irkernel (#2434)Javier2-0/+102
* New package - r-irkernel * New package - r-pbdzmq, dependency of r-irkernel * Adding blank line expected by flake8 tests
2016-11-29Added the '+debug' and '+except' variants to the 'tetgen' package. (#2370)Joseph Ciurej2-5/+78
Fixed a bug that was causing memory errors after asserts in 'tetgen@1.5.0'.
2016-11-29CDash fixes (#2438)hegner1-4/+4
use short spec instead of spec as CDash has a limitation in name length mark all problems as 'FAILED' as CDash does not understand "ERRORED" status
2016-11-29New package - r-rbokeh (#2436)Javier1-0/+55
2016-11-29jemalloc: Update to 4.3.1 (#2435)Erik Schnetter1-0/+1
This corrects a severe problem (segfault) on macos Sierra.
2016-11-29add support for installing the development (master) version of PETSc (#2431)Barry Smith2-0/+47
Funded-by: IDEAS Project: IDEAS/xSDK Time: .3 hours x
2016-11-29add headers neede for CDASH to junit output (#2433)hegner1-2/+6
2016-11-28Fix building latest version of flex (#2401)Adam J. Stewart7-57/+96
* Fix building latest version of flex * Don't need when clause * Remove perl deps, shebang too long
2016-11-28add missing zeromq dependency to r-rzmq (#2425)hegner1-0/+2
2016-11-28New package - r-pryr (#2424)Javier1-0/+46
2016-11-28New package - r-uuid (#2423)Javier1-0/+43
2016-11-28New package - r-rmarkdown (#2422)Javier1-0/+50
2016-11-28New package - r-repr (#2421)Javier1-0/+43
2016-11-28hdf5: fix for lib64 installation (#2349)Denis Davydov1-1/+3
2016-11-26scotch: fix compilation on macOS (#2326)Denis Davydov1-9/+26
2016-11-26New package - r-rinside (#2416)Javier1-0/+57
* New package - r-rinside * Changes to pass flake8 test
2016-11-26New package - r-rsnns (#2415)Javier1-0/+50
2016-11-26New package - r-rzmq (#2414)Javier1-0/+42
* New package - r-rzmq * Adding homepage
2016-11-26New package - r-irdisplay (#2413)Javier1-0/+45
2016-11-26New package - r-hexbin (#2412)Javier1-0/+45
2016-11-24netcdf: multiple improvements (#2377)Andrey Prokopenko1-15/+43
- Added 'dap' and 'cdmremote' variants This is based on work in #2324 with the following motivation: Turn off DAP support by deafult. DAP requires curl, which has issues with circular dependencies. For 95% of NetCDF users that do not need DAP, turning it off avoides this rats nest of problems. - Added 'parallel-netcdf' variant To support work with parallel-netcdf - Added 'shared' and 'static' build separation
2016-11-24Bugfix/update go packages (#2369)George Hartzell4-8/+49
* Update go-bootstrap package The last C based Go src tree was the 1.4 series. For a while they were cutting new releases so that people could bootstrap from a C only system. Now they're recommending that you either use the release-1.4 branch or that you use a date-stamped tarball that they'll produce on an as-needed basis. There are several issues that keep 1.4.2 from building on a CentOS 7 system. I've switched to the date based tarball. The cgo bits were also mis-behaving, but they're not needed for the bootstrapping task so I've set an environment variable that disables them. Details [on the install-from-source page](https://golang.org/doc/install/source#go14) and these issues: - https://github.com/golang/go/issues/17545 - https://github.com/golang/go/issues/16352. * Update go package Switched from pulling from the git repository to using the source tarballs and added digest values. Added support for 1.7.3, continued supporting 1.6.2, including patches for a couple of problems (details in [17545](https://github.com/golang/go/issues/17545) and [17986](https://github.com/golang/go/issues/17986). Dropped support for 1.5.4 and 1.4.2 because they no longer pass their tests and the patches above to not apply.
2016-11-24Adding pic_flag property to compilers (#2375)Andrey Prokopenko6-0/+24
Different compilers have different flags for PIC (position-independent code). This patch provides a common ground to accessing it inside specs. See discussions in #508 and #2373. This patch does not address the issue of mixed compilers as mentioned in #508.
2016-11-24Add dynamic search option for package sources (#2270)scheibelp4-8/+70
Package provides a 'list_url' attribute which may be searched to find download links. #1822 created a slowdown for all tests by always searching this URL. This reenables dynamic search only in cases where all other fetchers fail. This also only enables dynamic search when 'mirror_only' is set to false.
2016-11-24Updated version - r-lattice (#2410)Javier1-2/+2
2016-11-24New package - r-testit (#2409)Javier1-0/+43
2016-11-24New package - r-highr (#2408)Javier1-0/+44
2016-11-24New package - r-knitr (#2407)Javier1-0/+52
2016-11-24New package - r-gistr (#2406)Javier1-0/+55
2016-11-24New package - r-formatr (#2405)Javier1-0/+51
* New package - r-formatr * Block comment should start with '# '
2016-11-24New package - r-evaluate (#2404)Javier1-0/+46
2016-11-23added qt variants for pyqt to build (#2389)Gregory Lee2-2/+3
2016-11-23Updating SuperLU package file with ability to build version 4.3. (#2390)Jon Rood1-3/+74
* Updating SuperLU package file with ability to build version 4.3 (before they added cmake) with external blas or internal blas, and added capability to build the latest version 5.2.1 (with cmake) with internal blas. * Updating SuperLU package file with suggested changes, i.e. reorganizing installation methods based on version, adding cmake dependency when necessary, removing any use of internal blas, and also adding fpic variant. * Fixing flake8 failures.
2016-11-23Adding R library r-bitops (#2382)Javier0-0/+0
2016-11-23Fix indentation for newly created packages (#2391)Adam J. Stewart1-9/+9
2016-11-23New package - r-catools (#2394)Javier1-0/+47
* New package - r-catools * Splitting lines to pass flake8 travis test
2016-11-23New package - r-partykit (#2395)Javier1-0/+52
* New package - r-partykit * Splitting lines to pass flake8 travis test
2016-11-23New package - r-formula (#2396)Javier1-0/+43
2016-11-23New package - r-deoptim (#2397)Javier1-0/+43
2016-11-23New package - r-c50 (#2393)Javier2-0/+86
* Adding R library r-bitops * New package - r-c50
2016-11-23New package yaml-cpp (#2399)Jon Rood1-0/+49
* Adding new package for yaml-cpp. * Removing gcc specific c++11 flag. Adding fpic variant. Fixing formatting.
2016-11-22Update flex package url's and versions (#2384)Matthew Scott Krafczyk1-12/+21
* Update flex package url's and versions The old sourceforge page for flex is now defunct. While version 2.6.0 still downloads fine, later versions are no longer hosted there. Development continues on github. I've adjusted urls to point to this new location. In addition, from 2.6.0 onwards, a new naming scheme for releases seems to have been adopted. I've created a url_for_version function to sort this out. * Change flex to an AutotoolsPackage Also move the url_for_version function to the end of the package definition. * Implement the autoreconf function for flex
2016-11-22Update external distro package to 1.0.1 (#2381)Adam J. Stewart1-60/+92
2016-11-22Forgot http:// in tutorial link.Todd Gamblin1-1/+1
2016-11-22Fix broken doc links.Todd Gamblin6-9/+10
2016-11-21Merge pull request #2291 from ax3l/topic-icetbecker331-0/+47
Packages: Add IceT
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