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2021-11-03scr: 3.0rc2 release, variants and deps updates (#27178)Cameron Stanavige1-81/+140
* scr: 3.0rc2 release, variants and deps updates This adds 3.0rc2 release for end users to aid in testing scr for upcoming 3.0 release. Included in this change: - Require most recent component versions for this release - Add a variant for PDSH as it is now an optional dependency with this release - Add bbapi and datawarp (dw) variants - bbapi_fallback variant now requires bbapi variant with latest release - Add variants to enable/disable examples and tests - Add shared variant and current conflicts with ~shared - Update cmake_args to account for added variants where needed Additional updates: - Add maintainers - Use lists and for loops to clean up repetitive code involving all components - Use self.define and self.define_from_variant to clean up cmake_args - Use consistent quoting throughout package * Un-deprecate v2 and legacy * Use new conditional variants
2021-11-03simulationio package: add variants asdf, hdf5, rnpl, silo (#27172)Erik Schnetter1-3/+9
Define new variants asdf, hdf5, rnpl, silo to allow disabling or enabling dependencies.
2021-11-03hwloc: New version 2.6.0 (#27170)Erik Schnetter1-0/+1
2021-11-03mpitrampoline: New version 2.2.0 (#27171)Erik Schnetter1-0/+3
2021-11-03shtools: disable libtool, add 4.9.1, fix --test=root (#27014)Erik Schnetter2-0/+26
The Makefile expects the "other" libtool, not the GNU libtool we have in Spack. Closes https://github.com/spack/spack/issues/26993 Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
2021-11-03tfel and mgis: add new versions and fix tests (#27011)Thomas Helfer2-2/+56
Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
2021-11-03new package: telegraf (#27201)Andrew W Elble1-0/+22
2021-11-03Add Caliper v2.7.0 (#27197)David Boehme1-1/+2
2021-11-03trilinos: mark conflicts in @:13.1+tpetra^cuda@11 (#27188)Seth R. Johnson1-1/+4
* trilinos: fix @13.0.1+tpetra^cuda@11 * Mark CUDA conflict with old versions and always define TPL * trilinos: patch doesn't build so just mark as conflict
2021-11-03WarpX: 21.11 (#27158)Axel Huebl2-2/+4
Update `warpx` & `py-warpx` to the latest release, `21.11`.
2021-11-03nemsio package: add version 2.5.4; add option to build without MPI (#27030)Kyle Gerheiser1-2/+14
Version 2.5.4 adds an option which allows Nemsio to be built without MPI
2021-11-03r-reprex: add 2.0.1 (#27174)Manuela Kuhn1-12/+26
2021-11-03petsc, py-petsc4py: add versions 3.16.1 (#27152)Satish Balay2-0/+2
2021-11-03py-datalad: add 0.15.3 (#27193)Manuela Kuhn1-0/+1
2021-11-03New version: py-jupyterlab-pygments 0.1.2 (#27186)iarspider1-0/+1
2021-11-03sip: fix python_include_dir (#26953)Manuela Kuhn1-1/+3
2021-11-03py-nibetaseries: add new package (#27187)Manuela Kuhn1-0/+59
2021-11-03Allow conditional variants (#24858)Greg Becker13-32/+217
A common question from users has been how to model variants that are new in new versions of a package, or variants that are dependent on other variants. Our stock answer so far has been an unsatisfying combination of "just have it do nothing in the old version" and "tell Spack it conflicts". This PR enables conditional variants, on any spec condition. The syntax is straightforward, and matches that of previous features.
2021-11-02Bootstrap GnuPG (#24003)Massimiliano Culpo8-81/+551
* GnuPG: allow bootstrapping from buildcache and sources * Add a test to bootstrap GnuPG from binaries * Disable bootstrapping in tests * Add e2e test to bootstrap GnuPG from sources on Ubuntu * Add e2e test to bootstrap GnuPG on macOS
2021-11-02Update docs how to display loaded modules (#27159)Richarda Butler1-2/+17
* Update spack load docs
2021-11-03build(deps): bump actions/checkout from 2.3.5 to 2.4.0 (#27179)dependabot[bot]4-18/+18
Bumps [actions/checkout](https://github.com/actions/checkout) from 2.3.5 to 2.4.0. - [Release notes](https://github.com/actions/checkout/releases) - [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md) - [Commits](https://github.com/actions/checkout/compare/1e204e9a9253d643386038d443f96446fa156a97...ec3a7ce113134d7a93b817d10a8272cb61118579) --- updated-dependencies: - dependency-name: actions/checkout dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2021-11-03r-dtplyr: add new package (#27112)Manuela Kuhn1-0/+31
2021-11-02Add build editions for catalyst builds. (#22676)Dan Lipsa2-12/+36
* Add build editions for catalyst builds. * Fix style. * Build edition works only for 5.8:
2021-11-02Add and propagate CUDA variants for DAV SDK (#26476)kwryankrattiger1-9/+33
2021-11-02trilinos: new version 13.2.0 (#27106)Satish Balay1-2/+6
* trilinos: add @13.2.0, and switch default to cxxstd=14 * trilinos: fix python dependency when using +ifpack or +ifpack2 * trilinos: add conflict for ~epetra +ml when @13.2.0: * trilinos: keep 13.0.1 as the preferred version * Update var/spack/repos/builtin/packages/trilinos/package.py Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov> * update Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov>
2021-11-02Improved error messages from clingo (#26719)Greg Becker7-72/+223
This PR adds error message sentinels to the clingo solve, attached to each of the rules that could fail a solve. The unsat core is then restricted to these messages, which makes the minimization problem tractable. Errors that can only be generated by a bug in the logic program or generating code are prefaced with "Internal error" to make clear to users that something has gone wrong on the Spack side of things. * minimize unsat cores manually * only errors messages are choices/assumptions for performance * pre-check for unreachable nodes * update tests for new error message * make clingo concretization errors show up in cdash reports fully * clingo: make import of clingo.ast parsing routines robust to clingo version Older `clingo` has `parse_string`; newer `clingo` has `parse_files`. Make the code work wtih both. * make AST access functions backward-compatible with clingo 5.4.0 Clingo AST API has changed since 5.4.0; make some functions to help us handle both versions of the AST. Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2021-11-02r-googlesheets4: add new package (#27114)Manuela Kuhn1-0/+39
2021-11-02r-dbplyr: add 2.1.1 (#27111)Manuela Kuhn1-3/+8
2021-11-02r-haven: add 2.4.3 (#27115)Manuela Kuhn1-3/+6
2021-11-02r-lubridate: add 1.8.0 (#27117)Manuela Kuhn1-4/+6
2021-11-02New versions of py-jupyter-server; fix tests (#27153)iarspider1-1/+36
* New versions of py-jupyter-server; fix tests * Update package.py
2021-11-02trilinos: Additional fix for linking C code when built with PyTrilinos (#19834)Tom Payerle1-2/+7
This removes `-lpytrilinos` from Makefile.export.Trilinos so that C code trying to link against a Trilinos built with PyTrilinos does not fail due to undefined references to python routines (libpytrilinos is only used when importing PyTrilinos in python, in which case those references are already defined by Python). There was already a bit of code to do something similar for C codes importing Trilinos via a CMake mechanism, this extends that to a basic Makefile mechanism as well. This patch also updates the comments to remove a stale link discussing this issue, and replacing with links to the some Trilinos issue reports related to the matter.
2021-11-02r-vroom: add new package (#27118)Manuela Kuhn1-0/+37
2021-11-02r-brms: add 2.16.1 (#27148)Manuela Kuhn1-0/+2
2021-11-02r-rvest: add 1.0.2 (#27147)Manuela Kuhn1-3/+7
2021-11-02r-callr: add 3.7.0 (#27146)Manuela Kuhn1-4/+5
2021-11-02r-forcats: add 0.5.1 (#27113)Manuela Kuhn1-2/+2
2021-11-02r-processx-3.5.2 (#27119)Manuela Kuhn1-2/+3
2021-11-02relocate: do not change library id to use rpaths on package install (#27139)Seth R. Johnson3-23/+7
After #26608 I got a report about missing rpaths when building a downstream package independently using a spack-installed toolchain (@tmdelellis). This occurred because the spack-installed libraries were being linked into the downstream app, but the rpaths were not being manually added. Prior to #26608 autotools-installed libs would retain their hard-coded path and would thus propagate their link information into the downstream library on mac. We could solve this problem *if* the mac linker (ld) respected `LD_RUN_PATH` like it does on GNU systems, i.e. adding `rpath` entries to each item in the environment variable. However on mac we would have to manually add rpaths either using spack's compiler wrapper scripts or manually (e.g. using `CMAKE_BUILD_RPATH` and pointing to the libraries of all the autotools-installed spack libraries). The easier and safer thing to do for now is to simply stop changing the dylib IDs.
2021-11-02r-hms: add 1.1.1 (#27116)Manuela Kuhn1-2/+4
2021-11-02r-crayon: add 1.4.1 (#27110)Manuela Kuhn1-2/+2
2021-11-02r-broom: add 0.7.9 and 0.7.10 (#27109)Manuela Kuhn1-2/+5
2021-11-02package/qgis_revert_incorrect_constraint (#27140)Sinan1-3/+6
* package/qgis_revert_incorrect_constraint * fix bug * also update dependency constraints * also update python version constraints Co-authored-by: sbulut <sbulut@3vgeomatics.com>
2021-11-02New version: py-isort 5.9.3 (#27144)iarspider1-0/+1
2021-11-02New version: py-jupyter-console 6.4.0; download sources from pip (#27150)iarspider1-8/+11
2021-11-02yoda: add zlib as a dependency (#26454)Joseph Wang1-0/+1
Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com> Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-11-02pumi: support build/install time and stand-alone testing (#26832)Cameron Smith1-7/+18
2021-11-02gtk packages: fix dependencies (#26960)Bernhard Kaindl7-2/+17
gconf depends on gettext and libintl (dep: intltool) glibmm, gtkmm, libcanberra and cups need pkgconfig glibmm needs libsigc++ < 2.9x(which are 3.x pre-releases) libsigc++@:2.9 depends on m4 for the build Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-11-02pgplot: add intel compiler support and add more driver (#26761)Chien-Chang Feng4-21/+153
2021-11-02Fix GitHub Action's container build (#27143)Massimiliano Culpo1-1/+2
#26538 introduced a typo that causes the Docker image build to fail.
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