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2022-04-28install --overwrite: use rename instead of tmpdir (#29746)Harmen Stoppels4-54/+45
I tried to use --overwrite on nvhpc, but nvhpc's install size is 16GB. Seems better to do os.rename in the same directory than moving the directory to `/tmp`. - [x] install --overwrite: use rename instead of tmpdir - [x] use tempfile
2022-04-27Add spiral fftx (#28583)Patrick Broderick7-45/+244
* add fftx package; rename spiral to spiral-software and add spiral-package-* * Update year in copyright notice * Add package description to FFTX/package.py * Changes to package files for SPIRAL & FFTX for PR * Update package definitions * remove unnecessary lines
2022-04-27Add HDF5 version 1.12.2. (#30348)Larry Knox1-0/+1
2022-04-27llvm: Add 14.0.1 14.0.2 (#30347)Paul R. C. Kent1-0/+2
2022-04-28Add Python `chmod +x` equivalent in `fpm` package (#30342)Wileam Y. Phan1-1/+9
2022-04-27z3: New version 4.8.16 (#30328)Erik Schnetter1-0/+2
2022-04-27tcsh: add version 6.24.00 (#30346)dlkuehn1-0/+1
Co-authored-by: David Kuehn <las_dkuehn@iastate.edu>
2022-04-27hiop: Enable barebones testing (#30313)Asher Mancinelli1-0/+37
* Enable barebones testing Run 6 test cases representative of the entire HiOp test suite. * Apply style changes * Dont use unpacking for py2 compat
2022-04-27armpl: add new package (#30305)Annop Wongwathanarat1-0/+179
Co-authored-by: Annop Wongwathanarat <annop.wongwathanarat@arm.com>
2022-04-27orthofinder: add version 2.5.4 (#30344)dlkuehn1-0/+1
Co-authored-by: David Kuehn <las_dkuehn@iastate.edu>
2022-04-27Kokkos: update package for release 3.6.00 (#30315)Luc Berger1-1/+2
2022-04-27mvapich2 MPI_ROOT needed in modules (#30335)Paul Ferrell1-0/+2
We've found that when using mvapich2 via modules, we need to set the MPI_ROOT environment variable.
2022-04-27Update ascent and deps for 0.8.x (#29954)kwryankrattiger7-49/+372
* Update package versions for Ascent/SDK * Umpire build static for cuda from dray * Propagate cuda_arch for ascent and dray packages. * Ascent: Update dependency versions for ascent@0.8: * VTK-h: Patch +shared+cuda for VTK-h 0.8.x * Ascent: Patch to allow @0.8: +shared+cuda * Turn off building ascent tests. * Update ascent patch * WIP: Ascent: Update patch to configure MPI build with CUDA * Ascent: Tests require vtk-m+testlib * WIP: Ascent: Constrain 0.7 for vtk-h * Ascent: Directly depend on VTK-m
2022-04-27e4s ci: uncomment umpire (#29776)eugeneswalker1-1/+1
2022-04-27Mesa: Constrain compatible LLVM version (#30102)kwryankrattiger1-0/+1
Base on release date, not actual compatibility, because LLVM version compatibility is not documented clearly in Mesa for upper version limits.
2022-04-27SCons: added versions 4.0.0-4.3.0 (#30296)Lucas Frérot1-2/+19
* SCons: added versions 4.0.0-4.3.0 * scons: correct package name casing in url_for_version
2022-04-27Allow PyTorch to forward gcc-toolchain cxxcflag to CUDA toolchains (#30318)Brian Van Essen1-0/+4
2022-04-27damask-*: add v3.0.0alpha6 (#30124)Martin Diehl4-11/+22
2022-04-27build(deps): bump actions/checkout from 2 to 3.0.2 (#30235)dependabot[bot]5-30/+30
Bumps [actions/checkout](https://github.com/actions/checkout) from 2 to 3.0.2. - [Release notes](https://github.com/actions/checkout/releases) - [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md) - [Commits](https://github.com/actions/checkout/compare/v2...2541b1294d2704b0964813337f33b291d3f8596b) --- updated-dependencies: - dependency-name: actions/checkout dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2022-04-27blat: add v37 (#30166)snehring1-1/+14
2022-04-27rust: add 1.60.0 and fix libgit2 incompatibility (#30123)Michael Kuhn1-0/+9
2022-04-27Added GPTune v3.0.0 and its dependency py-pymoo (#30119)liuyangzhuan2-1/+26
2022-04-27tauola: fix ~lhapdf (#30190)Valentin Volkl1-2/+7
2022-04-27Add fix for binutils 2.38 +gas makeinfo issue (#30209)Derek Ryan Strong1-0/+3
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-04-27Starpu and Fxt: new packages (#29285)nfurmento2-0/+206
2022-04-27build(deps): bump codecov/codecov-action from 3.0.0 to 3.1.0 (#30234)dependabot[bot]1-5/+5
Bumps [codecov/codecov-action](https://github.com/codecov/codecov-action) from 3.0.0 to 3.1.0. - [Release notes](https://github.com/codecov/codecov-action/releases) - [Changelog](https://github.com/codecov/codecov-action/blob/master/CHANGELOG.md) - [Commits](https://github.com/codecov/codecov-action/compare/e3c560433a6cc60aec8812599b7844a7b4fa0d71...81cd2dc8148241f03f5839d295e000b8f761e378) --- updated-dependencies: - dependency-name: codecov/codecov-action dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2022-04-27openmpi: add toggle for rsh plm (#30251)Harmen Stoppels1-1/+6
By default `openmpi` needs `rsh` from `openssh`, which is a somewhat redundant dependency for clusters using slurm. This PR adds a toggle to allow users to disable the ssh/rsh plm altogether.
2022-04-27gcta: rework package recipe (#30286)snehring2-10/+85
2022-04-27py-pil: deprecate package (#30308)Adam J. Stewart1-1/+1
2022-04-27relion: add altcpu variant and fix fftw (#30097)Glenn Johnson1-16/+53
This package was not setting FFTW when +mklfft was used with +cuda. Since both were set to 'True', the default build was not linked to any FFTW, leading to a run time error. It seems MKL support was conflated with alternative CPU acceleration support. This PR does the following: - adds the altcpu variant to specify non-GPU/CPU acceleration - sets a conflict between +altcpu and +cuda - sets an FFTW implementation - sets fltk+xft when +gui to get a decent looking GUI interface - sets tbb dependency only when +altcpu - adds dependency on ctffind - adds variant and dependency on motioncor2 - sets defaults for - qsub template location - ctffind location - motioncor2 location Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-04-27bucky: fix compile errors with newer gccs (#30314)snehring1-2/+10
2022-04-27ASP-based solver: handle installed specs from unknown namespaces (#30092)Massimiliano Culpo2-0/+44
fixes #28259 This commit discard specs from unknown namespaces from the ones that can be "reused" during concretization. Previously Spack would just error out when encountering them.
2022-04-27reprimand: update requests on boost (#30109)Erik Schnetter1-1/+1
2022-04-27suntans: add new package (#30149)Lhxone1-0/+46
2022-04-26py-cryptography@35: tell cargo to use cli git, not cargo internal git… ↵eugeneswalker1-0/+10
(#30307)
2022-04-26libgit2: add 1.4.3 and 1.3.1 (#30122)Michael Kuhn1-0/+2
2022-04-27fossil: New package (#30311)Erik Schnetter1-0/+25
* fossil: new package * fossil: Format code
2022-04-26Feature: Allow re-use of run_test() in install_time_test_callbacks (#26594)Tamara Dahlgren6-54/+167
Allow re-use of run_test() in install_time_test_callbacks Co-authored-by: Greg Becker <becker33@llnl.gov>
2022-04-27New package: CaNS (#30218)Lhxone1-0/+45
2022-04-26hadoop: Update url and add version 3.3.2 (#29812)haralmha1-1/+2
* hadoop: Update url and add version 3.3.2 * Update url
2022-04-26arrow: Add version 7.0.0 (#29962)haralmha1-0/+1
2022-04-26New package: Swan (#30217)Lhxone1-0/+40
2022-04-26gnuplot: Add version 5.4.3 and add workaround for not found DSO (#30163)haralmha1-0/+2
2022-04-26docs: Fix ROCmPackage example syntax (#30168)Ken Raffenetti1-1/+1
2022-04-26Add g2tmpl versions 1.10.2 and 1.10.1 (#30202)Kyle Gerheiser1-0/+2
2022-04-26Power9 build fix for ctffind4 (#30300)John Hodrien2-0/+17
Only tested against the latest version, which is why it only applies the patch when using 4.1.14. Fix comes from: https://grigoriefflab.umassmed.edu/forum/software/ctffind_ctftilt/installing_ctffind_4114_ibm_power9
2022-04-26EVE now use main instead of develop as main branch (#30220)Joel Falcou1-1/+1
2022-04-26old concretizer: update deprecation warning (#30227)Greg Becker1-2/+2
2022-04-26intel-xed: add version 2022.04.17 (#30239)Mark W. Krentel2-3/+17
1. Add version 2022.04.17 (new numbering scheme) and update mbuild resource. 2. Branch 'master' is now 'main'. 3. Old rev 10.2019.03 needs a patch for python vs python3.
2022-04-26Add NCIO v1.1.0 (#30306)Kyle Gerheiser1-0/+1
See release notes https://github.com/NOAA-EMC/NCEPLIBS-ncio/releases/tag/v1.1.0
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