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Add package for the BASH Automated Testing System.
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* Add support for 2.3.1
Updated digest and added a dependency on tbb.
* Cleanup patch name and add description
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* Update samtools family to 1.4
* simple cleanup
* Make bzip depends_on for future versions too
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* Add package for ncftp
* Flake8 cleanups
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* Add package for staden-io-lib
* Flake8 cleanups
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* Add package for mummer
Blocked on https://github.com/LLNL/spack/pull/3555.
* Make "check" step optional and flake8 cleanups
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* Add package for pigz
* Whitespace
* Remove leftover instructions (oops...)
* Flake8 cleanup
* Convert to MakefilePackage
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* Add package for blat
* Whitespace cleanup
* Flake8 cleanup
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Add support for nextflow versions 0.24.1 and 0.23.3.
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* fix for #3588
* set 'build_directory' variable instead
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* Added packages for Structural Simulation Toolkit and Dumpi trace
* sst-dumpi deps
Remove extraneous dependency from sst-dumpi
* Removed redundant function and fake-url from sst-dumpi package
* Fixed URL, Added git branches, requested changes
sst-dumpi version listed as 6.1, made an upstream change to 6.1.0
sst-macro and sst-dumpi can be installed as v6.1.0 and master branch
* Added bootstrap. Tweaked URLs and description
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Previous syntax fix in 8a873bb was not quite right.
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- Spack find would fail with "unknown namespace" for some queries when a
package from an unknown namespace was installed.
- Solve by being conservative: assume unknown packages are NOT providers
of virtual dependencies.
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- deactivate -a wouldn't work if the installation's package was no longer
available.
- Fix installed_extensions_for so that it doesn't need to look at the
package.py file.
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* googletest: New version 1.8.0
* googletest: Simplify
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- drop old TCL support from paraview build.
- add +plugins variant to have include directories installed. This is
enabled by default since the additional diskspace for includes is
really minimal and since this also allows re-use of the VTK libraries
from ParaView without necessarily requiring a separate VTK
installation.
- +opengl2 is now the default. As per all newer VTK and paraview versions.
BUG: broken install for paraview-5.0.1 with includes and without python
- incorrect conditional for ui_pqExportStateWizard.h when python is
disabled and includes are to be installed.
gcc compiler detection patch.
These have both been fixed in paraview 5.3.0
ENH: refactor as a CMakePackage.
- Note that "spack install paraview" works as expected, but
"spack build paraview" fails in weird unrelated ways.
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Make 0.163 the preferred version of elfutils.
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- later versions do not seem to work well with libdwarf.
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* Fix nettle dependency
GnuTLS requires a nettle from the 2.7 series, won't work
with 3.x (so sayeth configure when it crashes...).
* Fix configure symlinking GNUmakefile to itself
I'm confused about how this ever worked, but....
As configure runs, it does something like this:
```
config.status: linking /home/hartzelg/tmp/spack/var/spack/stage/gnutls-3.3.9-uq2u4ecucncv2l3akran765aystyvkys/gnutls-3.3.9/GNUmakefile to GNUmakefile
```
and since that is the cwd the build crashes with:
```
==> 'make' '-j28'
make: GNUmakefile: Too many levels of symbolic links
make: stat: GNUmakefile: Too many levels of symbolic links
make: *** No rule to make target `GNUmakefile'. Stop.
```
Since the comment in the configure script points out that the
GNUmakefile is "only for the maintainer" I've just commented out the
bit that leads to the symlinking.
Builds for me on CentOS 7. (I do have a recent-ish set of auto-*
things in my patch via linuxbrew)
* Wordsmith
* Fix symbolic link problem properly
Autotools magic. See #3565 for the details.
* Flake8 cleanup
* Add some headroom on the version number constraint
We really want < 3.0 but there's not a good way to express it.
We'd like to avoid having to update the file if they release 2.7.2.
This seems like a good compromise.
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- adjusted formatting to reduce some flake8 complaints
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BUG: provide patch for scotch 6.0.4 if building non-threaded
- corresponds to issue #20179 from the scotch issue trackter
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gnutls needs nettle from the 2.7 series. Might as well give it
the latest.
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* Add url_for_version and depends_on('libiconv')
Fetching is broken. See https://github.com/LLNL/spack/issues/3554.
libgd, when used in gnuplot at least, needs a dependency
on libiconv.
* Undo change from debugging pokery
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* pnfft: new package
* Convert some packages with overridden install from AutotoolsPackage to Package
* pnfft: fix URL
* Switch FFTW-derived packages back to AutotoolsPackage
* Disable unneeded build phases in FFTW and derived packages
* Separate build phases for FFTW and derived packages
* Fix broken merge
* fftw: pfft_patches for 3.3.6
* fftw: address @adamjstewart’s review comments
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also output repo and branch/commit/tag in one line
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