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2018-04-11add package py-gdbgui (#7715)healther1-0/+43
* add package py-gdbgui Change-Id: I553e1e4c4f6385348190817199e05b25522b57b4 * fix alignment * add setuptool runtimedependency * add gdb run dependency
2018-04-11Package.provides account for v deps that are provided conditionally (#7716)Massimiliano Culpo2-1/+13
fixes #7705 Package.provides now checks constraints to ensure that a spec provides a given virtual package. Note that 'strict=True' is not passed to satisfies as this function is also used during concretization.
2018-04-11Add package py-slurm-pipeline (#7681)healther1-0/+41
* add package py-slurm-pipeline Change-Id: Iade405a7e96f04e476cea76e460cac2ebdf21f95 * add missing py-six dependency Change-Id: I382fa4139880c1a61af3f314c74ed6e7c2e88c5b * Update package.py * Update package.py * Update package.py * fix flake8
2018-04-11Add ANTs package (#7717)Simon Flood1-0/+48
* Add ants package Add a package for ANTs (version 2.2.0) * Update package.py * Update package.py * Update package.py * Update package.py * Update package.py
2018-04-11add package py-python-socketio (#7721)healther1-0/+43
* add package py-python-socketio * fix indention * add description to eventlet variant * fix dependencies Change-Id: I425ae165dfcce30df6cbbd671cd6ef1bef5078dc * Update package.py * Update package.py * Update package.py * Update package.py
2018-04-10py-cnvkit: add new package (#7688)peetsv1-0/+46
* py-cnvkit: add new package * updating dependencies * correcting flake8 error * adding py-setuptools dependency
2018-04-10add package py-gevent (#7712)healther1-0/+40
* add package py-gevent Change-Id: I49722e02a961f20b9177ae8575b78b42bf6c01c9 * fix alignment * add cffi dependency
2018-04-10add package py-eventlet (#7722)healther1-0/+37
2018-04-10add package py-greenlet (#7720)healther1-0/+33
* add package py-greenlet * remove optional setuptools dependency
2018-04-10add package py-python-engineio (#7723)healther1-0/+39
* add package py-python-engineio * flake8 fix
2018-04-10lammps: add v20180316 (#7725)Christoph Junghans2-2/+5
* lammps: add v20180316 * add latte@1.1.1 and make lammps use it
2018-04-10hwloc: add v 2.0.1 (#7724)Daniel Topa1-1/+2
Signed-off-by: Dan Topa <dantopa@lanl.gov>
2018-04-10go: Update to 1.10.1 (#7708)Michael Kuhn2-11/+15
Also update go-bootstrap to the 20171003 snapshot.
2018-04-10add package py-pygdbmi (#7711)healther1-0/+36
* add package py-pygdbmi Change-Id: I9850ccecebb1d46e983cda39c371caab23ad61e9 * add runtime setuptools dependency (from distutils import) * remove unnecessary run dependency
2018-04-10Added C-Lime Package (#7707)thecorkscrew1-0/+37
* Added C-Lime Package * Small fix
2018-04-10add py-cython@0.28.1 (#7709)healther1-1/+1
Change-Id: I7e3931f8224a367ce1657256b3100139abcc4f86
2018-04-10add py-flask@0.12.2 (#7710)healther1-0/+1
Change-Id: I51887f661e6dd896a9f740b51f4e81bdf532f9b4
2018-04-10add package py-flask-compress (#7713)healther1-0/+38
* add package py-flaks-compress Change-Id: Ia67f292364f339907c7c0a5bd707a7a1e69877be * fix alignment * linebreak to make flake8 happy
2018-04-10add package py-flask-socketio (#7714)healther1-0/+44
* add package py-flask-socketio Change-Id: Ib9bb41b9c3de06f07ffb47449edf02476827b610 * fix alignment * add missing werkzeug dependency
2018-04-10Perl file copy recursive 0.40 (#7718)peetsv1-0/+1
* perl-file-copy-recursive: add newer version v0.40
2018-04-10Add latest versions of libxcb and xcb-proto (#7650)Adam J. Stewart2-5/+17
2018-04-10Fix GCC 6/7 build on APFS (#7696)Adam J. Stewart1-8/+7
2018-04-10fermi: Create new package. (#7702)lingnanyuan1-0/+42
* fermi: Create new package. * fermi: Add missing dependency. * fermi: Change dependency type of perl to run.
2018-04-09wgsim: Create new package. (#7674)lingnanyuan1-0/+47
* wgsim: Create new package. * fix flake8 error. * wgsim: change cc compiler to spack_cc. * add missing dependency.
2018-04-08new package "DSRC" (bioinformatics) (#7680)Sinan1-0/+45
* new package "DSRC" (bioinformatics) * remove uncommented line * get rid of unnecessary import * convert to MakefilePackage class * get rid of make() in install phase, remove spaces * make flake8 happy!
2018-04-07Add Package: nlohmann_json (#7690)Axel Huebl2-1/+61
Adds a spack package for the JSON C++ library https://github.com/nlohmann/json
2018-04-07Catch2: make install (#7668)Axel Huebl1-1/+18
Add a proper install variant for Catch(2). This allows to use Catch2 downstram with `pkg-config` and CMake's `find_package` commands via standard environment hints.
2018-04-06py-pyfaidx: adding new package (#7684)peetsv1-0/+37
* py-pyfaidx: adding new package * updating the url
2018-04-06Darshan 3.1.6 (#7686)carns2-0/+4
* update darshan-util to 3.1.6, add bzip2 option * add darshan-runtime 3.1.6
2018-04-06Fix build of xerces-c (#7611)Eric Müller1-0/+5
The build requires libiconv (but it doesn't find it when not providing LDFLAGS).
2018-04-06Package 'serf': link to the spack provided zlib installation. (#7667)Sergey Kosukhin1-0/+13
2018-04-06hapdip: Create new package and its dependency k8. (#7685)lingnanyuan2-0/+85
* k8: Create new package. * hapdip: Create new package. * Change description.
2018-04-05readfq: Create new package. (#7673)lingnanyuan1-0/+38
* readfq: Create new package. * fix flake8 error
2018-04-05Don't prepend Tcl/Python to PATH if in system directory (#7677)Adam J. Stewart2-2/+9
2018-04-05add package py-discover (#7671)healther1-0/+34
Change-Id: I67b9e4eb4dfd3a962b7fe8840f5eb012fcd009cc
2018-04-04rsync: adding version 3.1.3 (#7669)peetsv1-0/+1
2018-04-04make view understand hashes (#7573)healther1-4/+5
Fixes #7548 This updates the "spack view" command to use the same parsing logic as "spack install" on the user-provided specs. For example you can provide a DAG hash to refer to an exact installed spec instead of specifying name, compiler, etc.
2018-04-04octopus: add 7.3 (#7666)Denis Davydov1-5/+6
2018-04-04mvapich2: added version 2.3rc1 + variant to use alloca if available (#7595)Massimiliano Culpo2-35/+16
* mvapich2: added version 2.3rc1 + variant to use alloca if available * mvapich2: removed version 1.9 + cleaned recipe
2018-04-03Fix bug in test_find_with_globbing unit test (#7652)Adam J. Stewart1-1/+1
2018-04-03Do not call sys.exit() in except block (#7659)Zack Galbreath3-12/+31
When an invalid spec is encountered by `parse_specs()` we now raise a `SpackError` instead of calling `sys.exit()`
2018-04-03soapdenovo-trans: Create new package. (#7649)lingnanyuan1-0/+52
* soapdenovo-trans: Create new package. * change header * soapdenovo-trans: change package type to makefile. * soapdenovo-trans: fix flake8 error.
2018-04-03fix dealii dependencies for Clang 9.1.0 C++17 (#7644)Denis Davydov5-4/+88
* fix boost and muparser for Clang 9.1.0 with C++17 * muparser: add C++11 flags * dealii: temporary disable python by default * dealii: make CMake find right python
2018-04-02lsof: create new package (#7660)Matthias Diener1-0/+47
2018-04-02Open MPI: add 3.0.1 (#7661)Howard Pritchard1-1/+2
Open MPI 3.0.1 bug fix release is out the door! Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2018-04-02Current versions of kokkos conflict with hwloc 2.x (#7654)Robert Pavel1-1/+2
* Current versions of kokkos conflict with hwloc 2.x Current versions of kokkos cannot build with hwloc v2.x due to changes in the associated structs. Requiring v1.11.9 for the time being until it becomes clear what the kokkos model will be * Explicitly commenting fix for posterity Explicitly commented version number of hwloc dependency for kokkos for posterity purposes and to pass code coverage for speedy merging * Generalized Kokkos's Hwloc Dependency Generalized dependency to v1.x of hwloc * Fixed Flake8 issue Fixed comment to conform to flake8 * Fixed ordering for Version Requirements Fixed ordering to indicate <= 1.11.9, not >1 * Generalized kokkos dependency
2018-04-02r-flexclust: new package (#7656)Yifan Zhu1-0/+44
2018-04-02r-gss: new package (#7655)Yifan Zhu1-0/+36
2018-03-31Avoid double 'lib' for packages whose name already starts with lib (#7651)Adam J. Stewart4-12/+51
2018-03-31Features/pindel (#7619)David Orman1-0/+74
* added htslib 1.7 and checksum * pindel: added new package pindel * pindel: added package pindel * removed py-pybind11 edit * made flake8 happy * fixed additional flake8 errors * added comments about Makefile2 and removed FIXME template section * spelling
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