| Age | Commit message (Collapse) | Author | Files | Lines | |
|---|---|---|---|---|---|
| 2017-12-22 | clang,flang: update CC, CXX environment in installation module (#6737) | Andrey Prokopenko | 2 | -0/+9 | |
| 2017-12-22 | gmap-gsnap: adding version 2014_12_28 (#6720) | peetsv | 1 | -0/+1 | |
| 2017-12-21 | Fix python3 compatibility bug in spack edit command (#6748) | Adam J. Stewart | 1 | -2/+2 | |
| In Python 2, filter() returns a list, but in Python 3, filter() returns an iterator, and iterators have no length. | |||||
| 2017-12-21 | separate stdout and stderr for module loading (#6713) | becker33 | 1 | -1/+4 | |
| 2017-12-20 | Feature/fasttree (#6227) | Levi Baber | 1 | -0/+50 | |
| * fasttree: new package * fasttree: better version handling * fixing line length for flake8 | |||||
| 2017-12-20 | binary caching: handle files misidentified as needing relocation (#6679) | Patrick Gartung | 3 | -25/+54 | |
| * Only specify a file as needing relocation if it contains the spack root as a text string (this constraint also applies to binaries) * Don't fail if there is an error retrieving RPATH information from a binary (even if it is specified as requiring relocation) | |||||
| 2017-12-20 | Compiler flag handlers (#6415) | becker33 | 12 | -1320/+372 | |
| This adds the ability for packages to apply compiler flags in one of three ways: by injecting them into the compiler wrapper calls (the default in this PR and previously the only automated choice); exporting environment variable definitions for variables with corresponding names (e.g. CPPFLAGS=...); providing them as arguments to the build system (e.g. configure). When applying compiler flags using build system arguments, a package must implement the 'flags_to_build_system_args" function. This is provided for CMake and autotools packages, so for packages which subclass those build systems, they need only update their flag handler method specify which compiler flags should be specified as arguments to the build system. Convenience methods are provided to specify that all flags be applied in one of the 3 available ways, so a custom implementation is only required if more than one method of applying compiler flags is needed. This also removes redundant build system definitions from tutorial examples | |||||
| 2017-12-20 | ENH: better handling of mpich for openfoam packages | Mark Olesen | 3 | -69/+74 | |
| - define MPICH_SKIP_MPICXX, link libmpich instead of libmpi (as per disussion in PR #4990) ENH: more flexible editing/patching of openfoam env files CONFIG: comment out requirement for openmpi+thread_multiple - was originally slated for the 1712 release and beyond, but there are reportedly unstable version/network combinations. Leave as comment for future reference, since it may be arise again. STYLE: renamed openfoam-site.patch as 1706-site.patch (and reformatted) - to preserve against impending changes in the layout of config.{csh,sh}/settings | |||||
| 2017-12-20 | ENH: improved openfoam module creation (issue #4942) | Mark Olesen | 3 | -19/+146 | |
| - post-install module settings for openfoam-com and foam-extend. | |||||
| 2017-12-20 | picard: Add version 2.17.0 (#6729) | Eric | 1 | -0/+1 | |
| 2017-12-20 | octave: add optim and struct packages (#6733) | Denis Davydov | 2 | -0/+98 | |
| 2017-12-19 | sqlite package: apply B0 patch to additional versions (#6728) | Gregory Lee | 1 | -1/+1 | |
| 2017-12-19 | slepc: add 3.8.2 (#6724) | Denis Davydov | 1 | -0/+1 | |
| 2017-12-19 | intel-tbb: add 2018.2 (#6725) | Denis Davydov | 1 | -0/+2 | |
| 2017-12-19 | hypre: add 2.13.0 (#6726) | Denis Davydov | 1 | -0/+1 | |
| 2017-12-19 | suite-sparse: add 5.1.0 (#6727) | Denis Davydov | 1 | -0/+1 | |
| 2017-12-19 | Added GDB verison 8.0 (#6704) | Jack Morrison | 1 | -0/+1 | |
| 2017-12-19 | nextflow: adding version 0.21.0 (#6722) | peetsv | 1 | -0/+2 | |
| 2017-12-19 | Emacs: added gnutls variant (tested on Centos 7) (#6711) | Peter Doak | 2 | -0/+12 | |
| 2017-12-19 | gmsh: add 3.0.6 (#6718) | Denis Davydov | 1 | -0/+1 | |
| 2017-12-19 | CoinHSL : Prevent CoinHSL from building in parallel (#6715) | junkudo | 1 | -0/+3 | |
| CoinHSL does not seem to be able to be built in parallel. This commit forces serial compilation. | |||||
| 2017-12-19 | dealii: add GMSH, add CMAKE_FIND_APPBUNDLE to CMakePackage (#6723) | Denis Davydov | 2 | -2/+8 | |
| * dealii: add GMSH dependency * CMakePackage: add CMAKE_FIND_APPBUNDLE to prevent picking up binaries from /Applications | |||||
| 2017-12-19 | lftp: adding version 4.6.4 (#6721) | peetsv | 1 | -0/+1 | |
| 2017-12-18 | openfoam-org: new version (#6686) | Mark Olesen | 2 | -2/+29 | |
| Add new version with a patch. | |||||
| 2017-12-18 | IGV: new package (#6710) | peetsv | 1 | -0/+54 | |
| 2017-12-18 | spack install: make restaging the default (#6465) | Massimiliano Culpo | 2 | -3/+9 | |
| Fixes #5940 This PR changes the option '--restage' of 'spack install' to '--dont-restage', inverting its meaning and the default behavior of the command. | |||||
| 2017-12-18 | globus-toolkit: add version and openssl dependency (#6617) | Benedikt Riedel | 1 | -0/+3 | |
| 2017-12-18 | relion - added new stable version 2.1 (#6706) | Douglas Duckworth | 1 | -5/+2 | |
| 2017-12-17 | fix post install method for py3 in mercurial (#6497) | healther | 1 | -3/+5 | |
| * fix post install method for py3 in mercurial * Update package.py * Update package.py * use print_str instead of manual print detection * Update package.py * use only depends_on * Update package.py * Update package.py State py3 compatibility for @4.3: according to setup.py from the 4.3.tar.gz from pypi | |||||
| 2017-12-16 | Package 'cdo': get rid of unnecessary dependency on MPI C++ library. (#6632) | Sergey Kosukhin | 1 | -2/+9 | |
| 2017-12-16 | Add new package signify (#6645) | nshtg | 1 | -0/+39 | |
| OpenBSD tool to sign and verify signatures on files. See https://github.com/aperezdc/signify | |||||
| 2017-12-16 | breseq: Create new package (#6648) | Eric | 1 | -0/+44 | |
| 2017-12-16 | build lapacke with tmg (#6654) | fpruvost | 1 | -1/+4 | |
| 2017-12-16 | bwa: added version 0.7.16a and checksum (#6658) | David Orman | 1 | -0/+2 | |
| 2017-12-16 | Hadoop: Replace broken url (#6671) | Jack Morrison | 1 | -2/+2 | |
| 2017-12-16 | Caliper update, add version 1.6.0 (#6680) | David Böhme | 1 | -4/+17 | |
| 2017-12-16 | py-bx-python: Create new package (#6672) | Eric | 1 | -0/+39 | |
| 2017-12-16 | py-tetoolkit: Create new package (#6673) | Eric | 1 | -0/+42 | |
| 2017-12-16 | py-pandas: add versions 0.19.2 and 0.21.1 (#6687) | Eric | 1 | -0/+2 | |
| 2017-12-16 | Add petsc version 3.8.3 (#6688) | Paschalis Korosoglou | 1 | -0/+1 | |
| 2017-12-16 | Add clanguage variant for petsc (#6689) | Paschalis Korosoglou | 1 | -0/+8 | |
| 2017-12-16 | bedtools2: Add version 2.27.1 (#6693) | Eric | 1 | -0/+1 | |
| 2017-12-16 | MetaSV: adding new package (#6691) | peetsv | 1 | -0/+39 | |
| 2017-12-16 | PANDAseq: Create new package (#6694) | Eric | 1 | -0/+48 | |
| 2017-12-16 | DeNovoGear: Create new package (#6699) | Eric | 1 | -0/+43 | |
| 2017-12-16 | mefit: Create new package. (#6700) | lingnanyuan | 1 | -0/+47 | |
| 2017-12-16 | moltemplate: add new package (#6702) | Denis Davydov | 1 | -0/+38 | |
| 2017-12-15 | new package: gatk (#6674) | David Orman | 2 | -0/+91 | |
| 2017-12-14 | new package: Percept (#6636) | Jon Rood | 4 | -0/+151 | |
| This also adds the 'exception' boost library to the set of default libraries built by boost. | |||||
| 2017-12-14 | Skip collection of compilers which report an empty version (#6684) | scheibelp | 2 | -19/+39 | |
| Fixes #6200 For compilers that successfully run a version detection script but don't actually return a version, Spack was keeping track of the empty version and then failing when attempting to construct a compiler spec. This skips any attempt to add a compiler entry when no version is reported (but logs when a compiler fails to report a version). | |||||
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index : spack | |
| A flexible package manager that supports multiple versions, configurations, platforms, and compilers. | root |
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