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2017-11-12binary packages: do post install hooks (#6269)becker331-0/+1
2017-11-12SC17: advanced packaging tutorial (#6148)Massimiliano Culpo2-0/+564
* First draft of the advanced packaging tutorial * advanced packaging tutorial: improved phrasing Thanks Denis and Hartzell! * Fixed typos + reworded a couple of sentences
2017-11-12SC17: reworked module file tutorial section (#5657)Massimiliano Culpo6-363/+1980
* Reworked module file tutorial section First draft for the SC17 update. This includes: - adding an introduction on module files + Spack's module generation blueprints - adding a set-up section and provide a docker image for easy set-up - updating all the relevant snippets - extending a bit some of the concepts that were already touched * Added reference to #5582 + committed Dockerfiles Also fixed a couple of typos spotted by Denis. * module file tutorial: added section on template customization * module file tutorial: fixed minor typos + rephrased a sentence * module file tutorial: made explicit that Docker image comes with software * module file tutorial: improved phrasing and layout. Thanks Hartzell! * module file tutorial: added vim and nano to editors * module file tutorial: fixed typo * Fixed typos Thanks Adam! * module file tutorial: updated Dockerfile + minor changes in introduction
2017-11-11Don't include build-only dependencies in build cache hash (#6262)becker331-3/+5
2017-11-11petsc: update to version 3.8.2 (#6244)Satish Balay1-0/+1
Includes pkgconfig fix [for mfem static build failure]
2017-11-10Nekbone: Installing data files for example runs (#6243)Brian Homerding1-1/+4
* Nekbone: Installing data files for example runs * Typo Fix
2017-11-10Create symlink for 'swig' binary after installation. (#6240)Sergey Kosukhin1-0/+8
2017-11-10Fixed mfem mpi build issue. (#6254)Aaron Fisher1-4/+9
* Fixed mfem mpi build issue. * Fixed a non-mpi build issue and switched to the latest official MFEM release.
2017-11-10feature/r-reprex: new package (#6257)Yifan Zhu1-0/+47
2017-11-10add alpine ascent (#6224)Cyrus Harrison6-6/+551
* add ascent package and and deps * proper use of site_packages_dir prop * flake8 * add maitain, small updates * flake8 * flake8 * fixs for docstrings for sphinx
2017-11-10Group flags and values separated by space (#6169)scheibelp5-2/+52
Fixes #6154 For compiler options which set values using the syntax "-flag value" (with a space between the flag and the flag's value) the flag and value were treated as separate and reordered. This updates Spack's logic to treat the flag and value as a single unit, even if there is a space between them. It assumes that all flags are prefixed with "-" and that all flag values are not.
2017-11-10Add version 1.04 (#6259)becker331-0/+1
2017-11-10elfutils: add --no-as-needed flag for library ordering issue (#6256)becker331-1/+2
* add --no-as-needed flag for library ordering issue libelf * fix syntax error.
2017-11-10xclip: created new package (#6248)Yifan Zhu1-0/+46
2017-11-10r-clipr: created new package (#6249)Yifan Zhu1-0/+40
2017-11-09Add a code of conduct to Spack (#6251)Todd Gamblin1-0/+46
We're adopting the contributor covenant for now. This isn't something we've needed to use yet, but it is good to have in case we actually do have a problem.
2017-11-09deal with case where symbolic links are copied (#6178)Patrick Gartung1-0/+9
* deal with case where symbolic links are copied * Suggested changes
2017-11-09r-purrr: Create new package. (#6241)lingnanyuan1-0/+39
2017-11-09r-covr: Create new package. (#6239)lingnanyuan1-0/+48
2017-11-09r-readxl: Create new package. (#6238)lingnanyuan1-0/+42
2017-11-09r-cellranger: Create new package. (#6237)lingnanyuan1-0/+39
2017-11-09r-rematch: Create new package. (#6236)lingnanyuan1-0/+39
2017-11-09petsc: when hdf5 depends on zlib - petsc+hdf5 should also be configur… (#6189)Satish Balay1-2/+3
* petsc: when hdf5 depends on zlib - petsc+hdf5 should also be configured with zlib * petsc: fix dependency [of zlib to be on hdf5 - and not on petsc] * petsc: use the fact that hdf5/package.py has a hard dependency on zlib [so no need to check for this dependency in code] recommended-by: @davydden * petsc: change hdf5 dependency to 'hdf5+hl' as petsc configure is looing for -lhdf5_hl https://github.com/spack/spack/issues/5846
2017-11-09magma: cuda updates [from xsdk-0.3.0 branch] (#6160)Satish Balay1-1/+7
- add gcc dependency per cuda versions - Fix for cuda-9.0 as it does not support sm20 nvcc fatal : Unsupported gpu architecture 'compute_20'
2017-11-09spack buildcache: symlink and relative RPATH fixes (#6140)Patrick Gartung4-106/+153
* Skip rewriting files that are links (this also avoids issues with parsing the output of the 'file' command for symlinks) * Fail rather than warn for several gpg signing issues (e.g. if there is no key available to sign with) * Installation with 'buildcache install' only retrieves link and run dependencies (this matches 'buildcache create' which only creates tarballs of link/run dependencies) * Don't rewrite RPATHs for a binary if the binary cached package was created with relative RPATHs * Refactor relocate_binary to operate on multiple binaries (given as a collection of paths). This was likewise done for relocate_text and make_binary_relative
2017-11-09r-log4r: Create new package. (#6133)lingnanyuan1-0/+38
2017-11-09mesa: fixed url for version (#5818)Simone Bnà1-2/+14
2017-11-09ROOT needs to have a consistent version of binutils, as it is very sensitive ↵Benedikt Riedel1-0/+1
to the version of libopcodes. You can't move the code from one system (with the same OS) as another. (#6226)
2017-11-09r-analysispageserver: Create new package. (#6135)lingnanyuan1-0/+41
2017-11-09py-dlcpar (#6229)Levi Baber1-0/+36
* py-dlcpar: new package * py-dlcpar: whitespace
2017-11-09pexsi: add version 0.10.2 (#6232)baip1-2/+5
2017-11-09add sundials 3.1.0 (#6230)David Gardner1-1/+4
2017-11-08fix perl dependent modules, #5900 (#5937)Luigi Calori1-6/+8
* FIX perl dependent environmwent setup to avoid void lines in generated modules as #5900 * remove debug prints * fix flake8
2017-11-08Package/sosflow (#6122)Alfredo Adolfo Gimenez2-0/+53
* Added missing deps to libffs * SOSflow spack package pointing to sos_flow feature/spack branch * Using tag for spack build * Change url to spack/spack
2017-11-08add patch for building sundials (#6161)David Gardner2-0/+25
* add patch for building sundials on mac * add upper limit on the patch
2017-11-08r-callr: created new package (#6223)Yifan Zhu1-0/+36
2017-11-08r-rex: Create new package. (#6221)lingnanyuan1-0/+38
2017-11-08r-rvest: created new package (#6220)Yifan Zhu1-0/+41
2017-11-08fastme: new package (#6219)Levi Baber1-0/+42
2017-11-08r-selectr: created new package (#6218)Yifan Zhu1-0/+45
2017-11-08r-tseries: Create new package. (#6216)lingnanyuan1-0/+39
2017-11-08Added missing build dependency to json-c (#6211)sknigh1-0/+2
2017-11-08r-allelicimbalance: Create new package. (#6044)lingnanyuan1-0/+56
2017-11-08r-mzr: created new package (#6206)Yifan Zhu1-0/+47
2017-11-08r-msnbase: new package (#6207)Yifan Zhu1-0/+57
2017-11-08r-sqldf: Create new package. (#6208)lingnanyuan1-0/+50
2017-11-08r-gsubfn: Create new package. (#6209)lingnanyuan1-0/+49
2017-11-08r-vsn: new package (#6210)Yifan Zhu2-1/+54
* r-hexbin: updated md5 * r-vsn: created new package
2017-11-08r-quantmod: Update version to 0.4-11 (#6212)lingnanyuan1-0/+2
2017-11-08r-xml2: created new package (#6217)Yifan Zhu1-0/+40
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