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2018-11-15dbcsr: minor fixes due to upstream changes (#9799)Denis Davydov1-2/+3
2018-11-15Updated protobuf and py-protobuf to version 3.6.1 (#9536)Leonhard Reichenbach2-2/+5
* Updated protobuf and py-protobuf to version 3.6.1 also updated the download link as the repository has moved * protobuf: modified conflict
2018-11-14Add GMT, CitcomS, and fstrack packages (#9768)Adam J. Stewart8-0/+328
* Add initial packages for citcoms and dependencies * Ignore Pythia imports * Add py-merlin package * Add GMT package * Fixes to get GMT working * Get hc package building * Get CitcomS 3.2.0 working * Add fstrack package * Fix hash
2018-11-14r-cairo: new package (#9794)Levi Baber1-0/+20
* r-cairo: new package * Update var/spack/repos/builtin/packages/r-cairo/package.py Co-Authored-By: baberlevi <baberlevi@gmail.com>
2018-11-14Argobots: added @develop version and +valgrind variant (#9664)dorier1-0/+19
* added develop version in argobots package and added valgrind variant * made autotools required only for develop version * corrected style * Added --disable-valgrind Added --disable-valgrind to explicitly disable it when +valgrind isn't provided.
2018-11-14r-phytools: new package at 0.6-60 (#9766)Justin Stanley1-0/+32
* r-phytools: new package at 0.6-60 * r-phytools: add list_url * r-phytools: add deps, dep versions
2018-11-14openblas: add headers property (#9831)Geoffrey Oxberry1-0/+9
This commit adds only the public headers from the full list of headers installed by OpenBLAS; this list of headers is the same as in netlib-lapack.
2018-11-14elfutils: add version 0.174. (#9812)Mark W. Krentel1-0/+11
Pass cflags to configure so that configure gets the values from the spack install line. Disable -Werror so that we don't fail the build over a stray warning.
2018-11-14libunwind: add version for current snapshot (#9770)Mark W. Krentel1-0/+12
Libunwind releases are few and far between, so we need access to recent snapshots from the git repository. Pass cflags to configure so that make will respect the value from the spack install line.
2018-11-14netcdf-fortran: add LDFLAGS to fix contents of libnetcdff.la. (#9647)Sergey Kosukhin1-3/+10
2018-11-14new package: time (#9842)Levi Baber1-0/+19
2018-11-13node-js: add 10.13.0 and 11.1.0 (#9781)Michael Kuhn1-5/+8
Required for openssl@1.1 compatibility.
2018-11-13cmake: add 3.12.4 (#9758)Michael Kuhn1-0/+1
2018-11-13perl-net-ssleay: fix build (#9783)Michael Kuhn1-2/+3
- Add 1.85 - OPENSSL_PREFIX has to be set in the environment, otherwise Spack's openssl will not be found
2018-11-13erne: new package starting at 2.1.1 (#9676)Justin Stanley1-0/+36
* erne: new package starting at 2.1.1 * erne: remove unused configure args * erne: remove unused prefix arg * erne: add explicit mpi disable
2018-11-13Fix #9673 : build fonts on powerpc architecture (#9683)Luigi Calori2-8/+2
* use AutotoolsPackage so config.guess get updated by autoreconf step, fix build problem on ppc #9673 * same error, same fix under ppc arch
2018-11-13added r-bindr v 0.1.1 (#9717)Douglas Duckworth1-1/+2
2018-11-13r-genomeinfodbdata: url fix (#9732)Levi Baber1-1/+1
2018-11-13intel-parallel-studio: add missing updates (#9742)Matthias Diener2-2/+15
* intel-parallel-studio: add missing updates * add 2018.4
2018-11-13Packages/trinotate fix (#9745)Levi Baber1-0/+7
* trinotate: fix perl location * trinotate: not where that is * trinotate: glob * trinotate: needs perl-dbd-sqlite
2018-11-13Add pic variant to cflags in boost. (#9750)Alberto Chiusole1-2/+6
* Add pic variant to cflags in boost. * Improve description in pic variant of boost, see #9750.
2018-11-13new version (#9752)Miles Perry1-0/+2
2018-11-13glib: add 2.56.3 (#9754)Michael Kuhn1-0/+1
2018-11-13sqlite: add 3.25.3 (#9756)Michael Kuhn1-1/+3
2018-11-13gdbm: add 1.18.1 (#9757)Michael Kuhn1-0/+1
2018-11-13lmdb: add 0.9.22 (#9759)Michael Kuhn1-0/+1
2018-11-13eospac version bump (#9763)Daryl W. Grunau1-0/+2
2018-11-13r-combinat: new package at 0.0-8 (#9764)Justin Stanley1-0/+16
* r-combinat: new package at 0.0-8 * r-combinat: add list_url
2018-11-13glib: explicitly disable gtk-doc (#9771)Michael Kuhn1-0/+12
glib should not use the globally installed gtk-doc. Otherwise, gtk-doc can fail with Python errors such as `ImportError: No module named site`. This is due to the fact that Spack sets `PYTHONHOME`, which can confuse the global Python installation that is used by gtk-doc.
2018-11-13nginx: add 1.15.6 (#9780)Michael Kuhn1-0/+3
Needed to compile with gcc@8 and recent versions of glibc.
2018-11-13DIAMOND: add version 0.9.22 (#9790)Eric1-0/+1
2018-11-13stringtie: add version 1.3.4d (#9791)Eric1-0/+1
2018-11-13LIBXSMM 1.10 (#9813)Hans Pabst1-23/+24
* LIBXSMM 1.10 * Accurately replaced MD5 with SHA256 sums (libxsmm).
2018-11-13aragorn: add version 1.2.36 (#9817)Eric1-0/+1
2018-11-13minimap2: Add versions 2.10 and 2.14 (#9818)Eric1-0/+3
* Also add missing zlib dependency
2018-11-13New Package: Nyancat (#9819)Quinn1-0/+36
* nyancat: adding the most important piece of software ever written * nyancat: some formatting updates * nyancat: flake8 error fix
2018-11-13charm++: add version 6.9.0 (#9827)Matthias Diener1-0/+1
2018-11-13gromacs: added 2018.[34] (#9828)Christoph Junghans1-0/+2
2018-11-13hypre: patch only @2.13.0 and @2.14.0 on darwin (#9832)Geoffrey Oxberry1-1/+1
2018-11-13wt: add missing pkgconfig dependency and fix boost version range (#9835)Michael Kuhn1-1/+2
wt does not build with newer versions of boost.
2018-11-13libssh: fix fetching and add 0.8.5 (#9779)Michael Kuhn1-1/+7
Required for openssl@1.1 compatibility.
2018-11-13libevent: add 2.1.8 and 2.0.22 (#9777)Michael Kuhn1-3/+14
- 2.1.8 is required for openssl@1.1 compatibility - Introduce url_for_version since the URL has changed starting with version 2.0.22
2018-11-13Add new version 1.2.0 to the package (#9837)Valentin Clement (バレンタイン クレメン)1-0/+1
2018-11-13man-db: add missing gdbm dependency (#9751)Matthias Diener1-0/+1
2018-11-13openssh: add 7.9p1 (#9782)Michael Kuhn1-0/+9
- Required for openssl@1.1 compatibility - Fix openssh's privilege separation path to be below the prefix
2018-11-13Adding Paraview version 5.6. (#9788)Jon Rood1-0/+1
2018-11-13ruby: add 2.5.3 (#9793)Michael Kuhn1-1/+4
Required for openssl@1.1 compatibility.
2018-11-13thrift: add missing pkgconfig dependency (#9834)Michael Kuhn1-0/+1
Without pkgconfig, Spack's openssl cannot be found.
2018-11-13barrnap package: Add versions 0.6 and 0.7 (#9820)Eric1-0/+2
2018-11-13Fix bugs in Modules Tutorial (#9821)Adam J. Stewart1-3/+3
Found a couple bugs while trying to copy and paste the exact tutorial content.
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