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2019-09-13Remove CombinatorialSpecSet in favor of environments + stacksScott Wittenburg10-721/+83
2019-09-13Add pre-ci job generation for a multi-repo setupScott Wittenburg2-0/+103
2019-09-13Refactor release-jobs cmd based on use of environments (no docker either)Scott Wittenburg4-310/+193
2019-09-13Add schema for new gitlab-ci and cdash additions to environmentScott Wittenburg4-0/+220
2019-09-13py-bleach package: add version 3.1.0 (#12814)Adam J. Stewart1-4/+5
2019-09-13py-cython package: fix --test (#12813)Adam J. Stewart1-1/+1
Fix bug in string conversion of "make_jobs"
2019-09-13py-emcee package: add version 2.2.1 (#12812)Adam J. Stewart1-1/+2
2019-09-13wcslib package: add version 6.4 (#12810)Adam J. Stewart1-1/+2
2019-09-13Add diamond dependencyGlenn P Johnson1-0/+1
2019-09-13Update braker packageGlenn P Johnson1-6/+33
- add version 2.1.4 - change url to github - add perl dependencies - new version has a new source layout - filter shebang to use spack perl
2019-09-13Fixes for augustus packageGlenn P Johnson1-13/+23
- add missing perl dependency - only filter Makefile if referred to dependency is in the spec - rewrite the shebang line of scripts to use spack perl - remove tabix dependency as tabix and bgzip are part of htslib
2019-09-13Update genemark-et packageGlenn P Johnson1-1/+19
- add version 4.46 - add missing perl dependencies - new version has different source layout - filter shebang to use spack perl
2019-09-13New package: py-pykwalify (#12540)Sinan1-0/+28
2019-09-13preCICE: added versions 1.6.0 and 1.6.1 (#12809)Frédéric Simonis1-0/+2
2019-09-13diamond: added version 0.9.25 (#12805)Glenn Johnson1-0/+1
2019-09-12New package: py-ruamel-yaml (#12543)Sinan1-0/+29
2019-09-12Singularity package: add version 3.4.0 (#12785)Owen Solberg2-3/+22
This version in combination with the included patch can install without root.
2019-09-12New package: cryptsetup (#12762)Owen Solberg2-0/+60
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-09-12add compilation option to sqlite (#12794)Sinan1-0/+5
* add compilation option to sqlite * rename variant * fix bug * re-rename variant
2019-09-12Update legion gasnet config (#12523)ktsai72-12/+32
2019-09-12BUG: recursively load modules with tcsh (#12664)Tyler Reddy1-1/+6
* for tcsh and csh, spack load -r package should now correctly load recursively instead of only loading the target package without any dependencies
2019-09-12py-gpaw: Fixed broken fftw linking in newer versions of py-gpaw (#12795)Simo Tuomisto1-0/+2
2019-09-11fgsl: new version + fix for recent spack commit (#12790)brietzke1-0/+6
2019-09-11module parsing: make heuristic to get paths from modules more robust (#12693)Greg Becker2-36/+87
* module parsing: make heuristic to get paths from modules more robust * refactor module parsing
2019-09-11jsoncpp: new versions, support cxxstd variant. (#12780)Chris Green1-0/+20
2019-09-10create package popt (#12783)Owen Solberg1-0/+15
2019-09-10fix bug in p4est (don't use MPI spec if not compiling with MPI) (#12784)Jonas Lippuner1-5/+5
2019-09-10openmx: new package (#12768)Hironori-Yamaji1-0/+80
* openmx: new package * openmx: use copy method
2019-09-10cuda: New version 10.1.243 (#12777)Janne Blomqvist1-4/+14
* cuda: New version 10.1.243 Adds CUDA 10.1.243. The installer command-line arguments have slightly changed, hence in the install method the version needs to be inspected in order to give the correct arguments for the new installer. * cuda: Combine common command-line arguments The CUDA 10.1+ installer has slightly different command-line arguments than previous versions. Keep the common parts together and only split where they are different. * Make flake8 happy
2019-09-10py-atropos: new package (#12745)Owen Solberg1-0/+26
* create new package py-atropos * remove whitespace * make tqdm and pysam dependencies optional, exposed as variants
2019-09-10ccs-qcd: disable parallel builds (#12775)Hironori-Yamaji1-2/+2
2019-09-09packages service: fix docker build again (#12774)Axel Huebl1-1/+1
CD is hard.
2019-09-09packages service: fix docker build (#12773)Axel Huebl1-1/+1
The build instructions I cloned from did not work ;)
2019-09-09packages build: fix path to spack (#12772)Axel Huebl1-1/+4
Fix docker build for packages.spack.io
2019-09-09Fix CD: Packages Service First (#12764)Axel Huebl1-81/+2
* Fix CD: Packages Service First Build the packages.spack.io service images first, so they are guaranteed to be pushed even if further images fail to build. Fix the query to the `spack` script executed in later builds. * CD: Remove Spack Images Now done on Dockerhub.
2019-09-09update bbmap (#12721)xfzhao1-1/+6
* update bbmap * remove one extra comment line
2019-09-09Fix pkgconfig dependencies (#12714)Michael Kuhn3-3/+3
pkgconfig is the virtual dependency, pkg-config is an implementation.
2019-09-09Update py-bokeh: new version & dependencies" (#12724)brietzke1-9/+12
* update py-bokeh: new version & dependencies * Revert "update py-bokeh: new version & dependencies" This reverts commit 5e191a0b20a89f09630b4d223a28b19db715603f. * update py-bokeh: new version & dependencies * trigger travis-ci * adjust python dependency-type to br
2019-09-09New package: py-fsspec (#12725)brietzke1-0/+18
* update py-bokeh: new version & dependencies * Revert "update py-bokeh: new version & dependencies" This reverts commit 5e191a0b20a89f09630b4d223a28b19db715603f. * new package: py-fsspec: add package.py * trigger travis-ci * adjust python dependency-type to br
2019-09-09Paraview version (#12766)Dan Lipsa1-5/+10
* Update paraview * Paraview 5.6.2 provides only .xz (no .gz) * Add list_url and list_depth
2019-09-09clang: add another regex for version detection (#12769)Massimiliano Culpo2-0/+5
This is similar to #10191. The Ubuntu package for clang 8.0.0 displays a very unusual version string, and we need this new regex to detect it as just 8.0.0 Unit test have been complemented by the output that was failing detection.
2019-09-09binutils: fix undefined symbol libintl_dgettext (#12770)viniciusvgp1-0/+1
2019-09-08Add CORS for spack.packages.ioAxel Huebl2-0/+4
Add the HTTP header `Access-Control-Allow-Origin: *` for our NGINX service that is serving static JSON content on https://spack.packages.io .
2019-09-08CGNS: Add setting of RPATH on Darwin (#9984)Greg Sjaardema1-0/+7
* CGNS: Add setting of RPATH on Darwin This should go in the CGNS CMakeLists.txt, but it isn't there yet and won't be in previous versions, so best to handle it here. If building on darwin/MacOSX, need to set the RPATH so applications can find shared library correctly. * Restrict MACOSX_RPATH setting This has now been added to the CGNS distribution, so the setting of `CMAKE_MACOSX_RPATH` should be restricted to current and previous releases and not upcoming releases.
2019-09-08fribidi@1.0.5: new package (#12386)Geoffrey Oxberry1-0/+22
2019-09-08new package: py-iniparse (#12638)Sinan1-0/+20
* new package: py-iniparse * add git version supporting python3 * redo python dependency
2019-09-08Package/py configobj (#12639)Sinan1-0/+30
* new package: py-configojb * add version 4.7.2 * improve dependencies * fix url for versions > 5.0.0 * Update var/spack/repos/builtin/packages/py-configobj/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-configobj/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * use format to create url strings * fix typo * improve style * Update var/spack/repos/builtin/packages/py-configobj/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-09-08for fakeroot support, add "shadow" dependency (#12754)Owen Solberg1-3/+4
* adding checksum for singularity 3.4, adding dep for shadow * make v3.4 a TODO for now -- needs cryptsetup package first
2019-09-08Fix PyQt installation (#12479)Adam J. Stewart6-30/+88
* Fix PyQt installation * Switch dependency type * Replace SIP dependency with resource * Relax py-pyqt4 Qt dependency
2019-09-08py-gpaw: Fixing missing numpy include path, adding newer version of p… ↵Simo Tuomisto2-3/+28
(#12737) * py-gpaw: Fixing missing numpy include path, adding newer version of py-gpaw and fixing a bug with libxc.c in older py-gpaw * py-gpaw: Fix Python and ASE version dependencies - GPAW 19.8.1 requires Python 3.x, add dependency on python@3.5: - GPAW releases are associated with a corresponding ASE release, add matching ASE version dependencies. * py-gpaw: Enable the scalapack variant by default GPAW installation instructions say scalapack is optional but "highly recommended". Thus enable it by default.
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