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- Spack doesn't need eggs -- it manages its own directories
- Simplify install layout and reduce sys.path searches by installing all
packages flat (eggs are deprecated for wheels, and this is also what
wheels do).
- We now supply the --single-version-externally-managed argument to
`setup.py install` for setuptools packages and setuptools.
- modify packages to only use setuptools args if setuptools is an
immediate dependency
- Remove setuptools from packages that do not need it.
- Some packages use setuptools *only* when certain args (likeb
'develop' or 'bdist') are supplied to setup.py, and they specifically
do not use setuptools for installation.
- Spack never calls setup.py this way, so just removing the setuptools
dependency works for these packages.
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* fetch git submodules recursively
This is useful if the submodules have submodules themselves. On
the other hand doing a recursive update doesn't hurt if there
is only one level.
* fetch submodules with depth=1 as well (fix #2190)
* use git submodule with depth only for git>=1.8.4
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Update tests to use codecov for multiple python versions.
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- Spack install would previously fail if it could not load a package for
the thing being uninstalled.
- This reworks uninstall to handle cases where the package is no longer
known, e.g.:
a) the package has been renamed or is no longer in Spack
b) the repository the package came from is no longer registered in
repos.yaml
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* Convert LLVM to CMakePackage, update cmake dependency version
* Remove unused import
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- gcc on macOS says it's version 4.2.1, but it's really clang, and it's
actually the *same* clang as the system clang.
- It also doesn't respond with a full path when called with
--print-file-name=libstdc++.dylib, which is expected from gcc in abi.py.
Instead, it gives a relative path and _gcc_compiler_compare doesn't
understand what to do with it. This results in errors like:
```
lib/spack/spack/abi.py, line 71, in _gcc_get_libstdcxx_version
libpath = os.readlink(output.strip())
OSError: [Errno 2] No such file or directory: 'libstdc++.dylib'
```
- This commit does two things:
1. Ignore any gcc that's actually clang in abi.py. We can probably do
better than this, but it's not clear there is a need to, since we
should handle the compiler as clang, not gcc.
2. Don't auto-detect any "gcc" that is actually clang anymore. Ignore
it and expect people to use clang (which is the default macOS
compiler anyway).
Users can still add fake gccs to their compilers.yaml if they want, but
it's discouraged.
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* Checksum code wasn't opening binary files as binary.
- Fixes Python 3 issue where files are opened as unicode text by default,
and decoding fails for binary blobs.
* Simplify fetch test parametrization.
* - add tests for URL fetching and checksumming.
- fix coverage on interface functions in FetchStrategy superclass
- add some extra crypto tests.
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* Fix HPL build, convert to MakefilePackage
* Flake8 fix
* Fix: spec -> self.spec
* Properly query for system libraries
* Update Intel-MKL as well
* Recurse in system libs, fix MKL path, fixes lapack_libs
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* Fix for llvm 4.0.0 on centos
This addresses https://github.com/LLNL/spack/issues/3791
* Only enable this option if on linux
* Change condition to satisfy standard
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* Added a package for the MDAnalysis toolkit.
* Added has for Keras version 2.0.3
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Since scorep does not support all use cases yet, vampirtrace is still
useful in some circumstances.
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* Revert "Override partial installs by default (#3530)"
This reverts commit a65c37f15dff4b4d60784fd4fcc55874ce9d6d11.
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* Revert "Add lmod files to MODULEPATH (#3912)"
This reverts commit 186d1f4511c8aa3bc5ce661b1e883db10e20958a.
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* Package install remove prior unfinished installs
Depending on how spack is terminated in the middle of building a
package it may leave a partially installed package in the install
prefix. Originally Spack treated the package as being installed if
the prefix was present, in which case the user would have to
manually remove the installation prefix before restarting an
install. This commit adds a more thorough check to ensure that a
package is actually installed. If the installation prefix is present
but Spack determines that the install did not complete, it removes
the installation prefix and starts a new install; if the user has
enabled --keep-prefix, then Spack reverts to its old behavior.
* Added test for partial install handling
* Added test for restoring DB
* Style fixes
* Restoring 2.6 compatibility
* Relocated repair logic to separate function
* If --keep-prefix is set, package installs will continue an install from an existing prefix if one is present
* check metadata consistency when continuing partial install
* Added --force option to make spack reinstall a package (and all dependencies) from scratch
* Updated bash completion; removed '-f' shorthand for '--force' for install command
* dont use multiple write modes for completion file
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* Set proper deptypes for certain build systems
* Add depends_on to namespace
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* Add tests to mercurial package
* Add support for --insecure with mercurial fetching
* Install man pages and tab-completion scripts
* Add tests and latest version for all deps
* Flake8 fix
* Use certifi module to find CA certificate
* Flake8 fix
* Unset PYTHONPATH when running hg
* svn_fetch should use to svn-test, not hg-test
* Drop Python 3 support in Mercurial
Python 3 support is a work in progress and isn't currently
recommended:
https://www.mercurial-scm.org/wiki/SupportedPythonVersions
* Test both secure and insecure hg fetching
* Test both secure and insecure git and svn fetching
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* Initial add of flac
* Initial add of id3lib
* Initial add of the opus codec
* Initial add of sox audio processing tools
* Cleanup spec files to be inline with current standard
* Fix pep8 compliance
* Remove un-needed configuration
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* ncl: add depends_on statements for bison, flex and libiconv
* ncl: depends on flex for building and linking
* ncl: links with -ll, so requires flex with variant '+lex'
* ncl: depends on szip; external hdf5 may not provide it
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* espresso: fix missing dependency on elpa, add 6.1.0
* override default libs of elpa to get shared always
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* Disable parallel builds
The install step creates a bunch of links to the vim binary, e.g.
`view`. When run with -j greater than 1 there are silent failures.
Running w/out parallelism seems to fix it.
* Only constrain the install phase to be -j 1
Thanks @adamjstewart!
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* Adding new python package: py-simplejson
* Adding setuptools dependency
* Fixing typo
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see https://github.com/LLNL/spack/pull/3852#pullrequestreview-32996651
for details
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* ocotpus and arpack-ng: fix arpack bug and add libs to arpack-ng
also rename the variant to be consistent with other packages
* fix a bug
* flake8
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