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2019-10-08Build older openfoam (#13071)Mark Olesen2-19/+18
* adjust building of OpenFOAM 1806 and earlier - spack now unpacks into spack-src, but earlier OpenFOAM versions still expect particular directory names (eg, OpenFOAM-v1806). Resolve by creating a symlink during patching. * replace openfoam 1806 patch with URL version
2019-10-08Added py-pamela package. Dependency of py-jupyterhub. (#13075)wspear1-0/+17
2019-10-08Add headsup note re cryptsetup patch for v2.2.2 (#13076)George Hartzell1-0/+4
2019-10-08travis: bump python version for flake8 and build testsMassimiliano Culpo1-7/+7
2019-10-08pmdk: added v 1.7 (#13067)Phil Carns1-0/+1
2019-10-07Add macOS Catalina support (#13070)Adam J. Stewart1-12/+22
2019-10-07py-apipkg: Fix mix up of checksums (#13066)Oliver Breitwieser1-2/+2
Change-Id: Ibae329c5a6cf7e3741a879612da523e11e3b0ab9
2019-10-07Spack environments can concretize specs together (#11372)Massimiliano Culpo4-4/+171
This PR adds a 'concretize' entry to an environment's spec.yaml file which controls how user specs are concretized. By default it is set to 'separately' which means that each spec added by the user is concretized separately (the behavior of environments before this PR). If set to 'together', the environment will concretize all of the added user specs together; this means that all specs and their dependencies will be consistent with each other (for example, a user could develop code linked against the set of libraries in the environment without conflicts). If the environment was previously concretized, this will re-concretize all specs, in which case previously-installed specs may no longer be used by the environment (in this sense, adding a new spec to an environment with 'concretize: together' can be significantly more expensive). The 'concretize: together' setting is not compatible with Spec matrices; this PR adds a check to look for multiple instances of the same package added to the environment and fails early when 'concretize: together' is set (to avoid confusing messages about conflicts later on).
2019-10-07watch: added new package (#13044)Adam J. Stewart1-0/+49
2019-10-06Added go 1.13.1 and 1.12.10 (#12977)Paul1-0/+2
2019-10-06gnuplot: add 5.2.7 and fix qt dep (#13058)Denis Davydov2-1/+3
2019-10-06freeimage: new package (#13049)Matthias Wolf2-0/+40
* freeimage: new package * Address comments. * Whitespace
2019-10-06unrar: Add package (#12908)Ruben Di Battista1-0/+31
2019-10-06Add missing py-contextlib2 (#13056)Oliver Breitwieser1-0/+20
Change-Id: I8e0a90d4aa2c9f46230a6fe35ce5f4fa44672faf
2019-10-05qt: help pick up dependencies (#11172)Denis Davydov2-5/+39
* qt: help pick up dependencies * qt: add 5.12.5
2019-10-05doc: fix #12245 non-functional libdwarf dependency (#12515)Pariksheet Nanda1-4/+4
Applying accepted fix from spack/spack.io#4
2019-10-05Consistently support pkg-config files in share subdirectory (#12838)Michael Kuhn6-2/+9
While the build environment already takes share/pkgconfig into account, the generated module files etc. only consider lib/pkgconfig and lib64/pkgconfig.
2019-10-05Package/fujitsu mpi (#12807)t-karatsu1-0/+40
* fujitsu-mpi: commit new package * Add homepage. * * Modified the MPI commands to a simple form. * Unnecessary processing has been deleted. * Add conflict for all compilers except the Fujitsu compiler. * Fix typo. * Delete versions. * Delete conditions for specifying the Fujitsu compiler.
2019-10-05expect: fix darwin install name (#13042)Adam J. Stewart1-0/+12
* expect: fix darwin install name * Fix expect binary as well
2019-10-05New package: cxxopts (#13035)Teodor Nikolov1-0/+42
* New package: cxxopts * Use +unicode instead of unicode=True - Make the unicode option more explicit * [cxxopts] Fix white space warnings
2019-10-05procps: new package (#13043)Adam J. Stewart1-0/+43
2019-10-04bugfix: issue with custom dotkit root in config.yaml (#13046)Massimiliano Culpo2-1/+25
When removing support for dotkit in #11986 the code trying to set the paths of the various module files was not updated to skip it. This results in a failure because of a key error after the deprecation warning is displayed to user. This commit fixes the issue and adds a unit test for regression. Note that code for Spack chains has been updated accordingly but no unit test has been added for that case.
2019-10-04grpc: new package (#13054)Federico Ficarelli1-0/+43
* Add grpc@1.23.1 * Let version in url match actual one
2019-10-04llvm: update link to the document explaining codesign (#13047)Andreas Baumbach1-2/+2
Change-Id: I01242cbb43b0c62a659739a5d7e9d998dd27e794
2019-10-04Update the VTK-m package with better defaults and cuda corrections (#12850)Robert Maynard1-6/+16
2019-10-04superlu-dist: add openmp variant (#13052)Cody Balos1-0/+6
2019-10-04migrate: add zlib dependency. (#13039)Toyohisa Kameyama1-4/+8
* migrate: add zlib dependency. * flake8. * autotools related tools change to build.
2019-10-04LLVM 9.0.0 (#13050)Felix Thaler1-0/+16
2019-10-03fftw: simplify the recipe and make use of specific targets (#12889)Massimiliano Culpo1-123/+68
* fftw: grouped precisions in a single variant * fftw: simd options are now based on target features and not on variants * fftw: simplified computing the selected precisions
2019-10-03boost: Use gcc toolset for bootstrap with Fujitsu compiler. (#12876)t-karatsu1-1/+1
2019-10-03graphmap: add zlib dependency. (#13031)Toyohisa Kameyama1-0/+2
2019-10-03fastqvalidator: add zlib dependency and Removes erroneous deletes in ↵Toyohisa Kameyama2-0/+29
Chromosome (#13030)
2019-10-03hapcut2: add zlib dependency. (#13032)Toyohisa Kameyama1-0/+2
2019-10-03liblbxutil: Add zlib dependency. (#13033)Toyohisa Kameyama1-0/+1
2019-10-03metabat: Add zlib and ncurses dependency. (#13034)Toyohisa Kameyama1-0/+2
2019-10-03muse: add zlib dependency. (#13040)Toyohisa Kameyama1-0/+2
2019-10-03ngmlr: add zlib dependency. (#13041)Toyohisa Kameyama1-0/+2
2019-10-03fix ipykernel dependency, newer versions are python3-only (#13019)Andreas Baumbach1-2/+3
* fix ipykernel dependency, newer versions are python3-only * Update var/spack/repos/builtin/packages/py-ipykernel/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-ipykernel/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-10-03Update cctools to v7.0.18 (#13037)George Hartzell1-1/+2
- add version/checksum info for v7.0.18 - update checksum for v6.1.1 to use sha256, while I have the editor open...
2019-10-03updated manta checksum (#13038)Owen Solberg1-0/+1
2019-10-03Add py-flye 2.6 (#13025)Adam J. Stewart1-2/+13
2019-10-03Update compilers.yaml location in Getting Started docs (#13029)Adam J. Stewart1-11/+14
2019-10-03Add EasyBuild 4.0.0 (#13024)Adam J. Stewart4-18/+41
* Add EasyBuild 4.0.0 * Update homepage, remove no longer required deps * Replace version ranges with fixed versions
2019-10-03Update ECP Data & Vis SDK packages (#13027)Chuck Atkins2-23/+22
* ecp-io-sdk: Add faodel and sort variants * ecp-viz-sdk: Re-enable catalyst, sort variants, turn on by default * ecp-io-sdk and ecp-viz-sdk: Fix dependency variants
2019-10-03Generic x86_64 code compiled with GCC uses non deprecated mtune flags (#13022)Massimiliano Culpo2-6/+15
fixes #12928
2019-10-02Remove support for generating dotkit files (#11986)Massimiliano Culpo34-426/+121
Dotkit is being used only at a few sites and has been deprecated on new machines. This commit removes all the code that provide support for the generation of dotkit module files. A new validator named "deprecatedProperties" has been added to the jsonschema validators. It permits to prompt a warning message or exit with an error if a property that has been marked as deprecated is encountered. * Removed references to dotkit in the docs * Removed references to dotkit in setup-env-test.sh * Added a unit test for the 'deprecatedProperties' schema validator
2019-10-02added tasmanian version 7.0 to spack (#13003)Miroslav Stoyanov3-4/+52
2019-10-02New package: mapnik (#12708)Sinan1-0/+54
2019-10-02libint + cp2k: 2-stage build with 'tune' and 'fortran' variants (#12475)Tiziano Müller2-20/+128
* libint: switch to 2-stage build for 2.6.0+ * libint: add tune and fortran variants * cp2k: add support for libint >= 2.0 * cp2k: use pkg-config for linking libxc
2019-10-02cdhit: add zlib dependency. (#13015)Toyohisa Kameyama1-3/+7
* cdhit: add zlib dependency. * Add zlib variant.
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