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2019-12-17adios2: Fix use of builtin __clear_cache (#14123)t-karatsu2-0/+218
2019-12-17microarchitectures: readable names for AArch64 vendors (#13825)Massimiliano Culpo4-29/+102
Vendors for ARM come out of `/proc/cpuinfo` as hex numbers instead of readable strings. - Add support for associating vendor names with the hex numbers. - Also move these mappings from Python code to `microarchitectures.json` - Move darwin feature name mappings to `microarchitectures.json` as well
2019-12-16mrnet: remove nonexisting cti dependency (#14178)Todd Gamblin1-10/+1
MRNet had an optional dependency on `cti`, which doesn't exist. Remove it from the repo, at least until someone adds `cti` back.
2019-12-16Harden shell detection when procfs is available (#13950)Massimiliano Culpo1-3/+6
2019-12-16New ACTS version (#14180)Hadrien G1-0/+1
2019-12-16add new package : py-s3cmd (#14166)darmac1-0/+31
* add new package : py-s3cmd * add some depends and move depends behind the version
2019-12-16Travis exits at the first failing test, pin codecov at v4.5.4 (#14179)Massimiliano Culpo2-2/+2
Before this commit we used to run the entire unit test suite in the presence of a failure. Since we currently rely a lot on the state of the filesystem etc. the end report was most of the time showing spurious failures that were a consequence of the first failing test. This PR makes unit tests exit at the first failing test Also, pin codecov at v4.5.4 (last one supporting Python 2.6)
2019-12-14match bootstrapped compiler to architecture (#14059)Greg Becker1-0/+1
2019-12-14package hash: gracefully handle @when with non-string args (#14153)Peter Scheibel4-27/+95
* when constructing package hash, default to including a method in the content hash if we can't determine whether it would be included by examining the AST * add a test for updated content-hash calculations * refactor content hash tests to eliminate repeated lines
2019-12-14hpctoolkit: update git branch for version 'gpu' (#14155)Mark W. Krentel1-1/+1
2019-12-14Updated Hydrogen version to 1.3.2 (#14156)Brian Van Essen1-0/+1
2019-12-14add new package : memcached (#14162)darmac1-0/+40
2019-12-14add new package : jstorm (#14163)darmac1-0/+20
2019-12-14add new package : logstash (#14164)darmac1-0/+23
2019-12-14add new package : pig (#14165)darmac1-0/+23
2019-12-14add new package : rabbitmq (#14167)darmac1-0/+23
2019-12-14add new package : zookeeper (#14170)darmac1-0/+21
2019-12-14add new package : bind9 (#14172)darmac1-0/+21
2019-12-14add new package : rt-tests (#14174)darmac1-0/+22
2019-12-14Patch: explicitly use xbitmaps include dir in the automake package (#14128)Andras Wacha2-0/+51
* Patch: explicitly use xbitmaps include dir in the automake package * Added dependencies required for autoreconf: libtool, autoconf, automake, m4
2019-12-13add new package : cassandra (#14144)darmac1-0/+23
* add new package : cassandra * make stable version as a preferred one
2019-12-13Add latest version of jq (#14134)Adam J. Stewart2-2/+16
2019-12-13FIX: Making berkeley-db package fetch from correct links (#14147)Matthieu Dorier1-6/+12
* making berkeley-db package fetch from oracle website * removed blank space * making flake8 happy * fixing typos and order of versions
2019-12-13Add shared option to ParaView. (#14131)Dan Lipsa1-0/+12
* Add shared option to ParaView. * Use append for one attribute
2019-12-13Add new aws-parallelcluster package (#14139)Adam J. Stewart1-0/+26
2019-12-13Add latest version of py-tabulate (#14138)Adam J. Stewart1-1/+3
2019-12-13Add latest version of py-ipaddress (#14137)Adam J. Stewart1-1/+2
2019-12-13Add latest version of py-botocore (#14136)Adam J. Stewart1-3/+4
2019-12-13Add latest version of py-boto3 (#14135)Adam J. Stewart1-2/+4
2019-12-13Add latest version of oniguruma (#14133)Adam J. Stewart1-1/+20
2019-12-13Update CMake to version 3.16 (#14152)Seth R. Johnson1-0/+2
2019-12-13gmodel: fix error (#14140)noguchi-k2-0/+59
2019-12-13add new package : activemq (#14142)darmac1-0/+21
2019-12-13add new package : alluxio (#14143)darmac1-0/+23
2019-12-13docker: add `file`, adjust locale, and use python3 for ubuntu (#13508)Scott Wittenburg2-16/+56
* docker: add missing module to ubuntu images * docker: fix issue with missing locale * docker: one package per line + rm python2 support * docker: ubuntu image also needs 'file' for buildcache creation
2019-12-13Split out CDash options to a separate help document (#13704)Zack Galbreath3-13/+58
Prevent `spack help install` from getting too cluttered with CDash-specific documentation.
2019-12-13Patch fetching: remove unnecessary argumentPeter Josef Scheibel3-8/+4
2019-12-13Mirrors: skip attempts to fetch BundlePackagesPeter Josef Scheibel1-0/+10
BundlePackages use a noop fetch strategy. The mirror logic was assuming that the fetcher had a resource to cach after performing a fetch. This adds a special check to skip caching if the stage is associated with a BundleFetchStrategy. Note that this should allow caching resources associated with BundlePackages.
2019-12-13Mirrors: avoid re-downloading patchesPeter Josef Scheibel2-20/+28
When updating a mirror, Spack was re-retrieving all patches (since the fetch logic for patches is separate). This updates the patch logic to allow the mirror logic to avoid this.
2019-12-13Mirrors: perform checksum of fetched sourcesPeter Josef Scheibel1-0/+1
Since cache_mirror does the fetch itself, it also needs to do the checksum itself if it wants to verify that the source stored in the mirror is valid. Note that this isn't strictly required because fetching (including from mirrors) always separately verifies the checksum.
2019-12-13Mirrors: fix cosmetic symlink targetsPeter Josef Scheibel2-1/+34
The targets for the cosmetic paths in mirrrors were being calculated incorrectly as of fb3a3ba: the symlinks used relative paths as targets, and the relative path was computed relative to the wrong directory.
2019-12-13Allow repeated invocations of 'mirror create'Peter Josef Scheibel1-0/+6
When creating a cosmetic symlink for a resource in a mirror, remove it if it already exists. The symlink is removed in case the logic to create the symlink has changed.
2019-12-12fix libev url (#14066)darmac1-2/+1
* fix libev url * remove list_url in libev
2019-12-12compile python with sqlite loadable extensions (#14132)Sinan1-0/+4
2019-12-12cmake: Fix checksum of 4075.patch (#14125)t-karatsu1-1/+1
2019-12-12Fix py-jupyter-client version ranges (#14126)iarspider1-1/+2
2019-12-11charmpp: fix build failing from broken hardlink (#13922)Justin S1-0/+8
* charmpp: fix build failing from broken hardlink * charmpp: use setup_dependent_build_environment
2019-12-11Fix replacement of embedded 'gcc' in augustus (#14116)Glenn Johnson1-25/+25
PR #13975 added makefile filtering to replace gcc/g++ with the spack compiler. This conflicts with other filtering that is done in the package to add paths for dependencies. The text of the dependency paths might have 'gcc' in the path name, depending on the install_path_scheme, and that was being replaced by the new compiler filters. That would mangle the path to the dependecy resulting in a failed build. This PR moves the compiler filters to be before the other filters to make sure that the compiler is set before the dependency paths.
2019-12-11Add missing dependency on setuptools to py-subprocess32 (#14074)iarspider1-0/+3
* Add missing dependency on setuptools to py-subprocess32 * Update package.py * Update var/spack/repos/builtin/packages/py-subprocess32/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Update package.py
2019-12-11Bugfix for bad hydrogen tags (#14119)Brian Van Essen1-2/+2
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