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bugfix: fix compiler environment handling to reset environment after
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* Added unit tests to Github Actions
* Set user e-mail and name for git tests to succeed
* Simplify setup.sh logic
* Replicate Travis script on Github Actions
* Update flags since '.' is not allowed
* Added badge, simplified workflow
* Remove pinning of coverage
* Remove unit tests run on Github Actions from Travis
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parallel-netcdf's buildiface script needs perl during build.
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Co-authored-by: Andrew Elble <aweits@rit.edu>
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Bug fix release:
4.0.4 -- June, 2020
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- Fix a memory patcher issue intercepting shmat and shmdt. This was
observed on RHEL 8.x ppc64le (see README for more info).
- Fix an illegal access issue caught using gcc's address sanitizer.
Thanks to Georg Geiser for reporting.
- Add checks to avoid conflicts with a libevent library shipped with LSF.
- Switch to linking against libevent_core rather than libevent, if present.
- Add improved support for UCX 1.9 and later.
- Fix an ABI compatibility issue with the Fortran 2008 bindings.
Thanks to Alastair McKinstry for reporting.
- Fix an issue with rpath of /usr/lib64 when building OMPI on
systems with Lustre. Thanks to David Shrader for reporting.
- Fix a memory leak occurring with certain MPI RMA operations.
- Fix an issue with ORTE's mapping of MPI processes to resources.
Thanks to Alex Margolin for reporting and providing a fix.
- Correct a problem with incorrect error codes being returned
by OMPI MPI_T functions.
- Fix an issue with debugger tools not being able to attach
to mpirun more than once. Thanks to Gregory Lee for reporting.
- Fix an issue with the Fortran compiler wrappers when using
NAG compilers. Thanks to Peter Brady for reporting.
- Fix an issue with the ORTE ssh based process launcher at scale.
Thanks to Benjamín Hernández for reporting.
- Address an issue when using shared MPI I/O operations. OMPIO will
now successfully return from the file open statement but will
raise an error if the file system does not supported shared I/O
operations. Thanks to Romain Hild for reporting.
- Fix an issue with MPI_WIN_DETACH. Thanks to Thomas Naughton for reporting.
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
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(#17182)
See https://gitlab.cern.ch/hepmc/HepMC3/-/commit/ba38f14d8f56c16cc4105d98f6d4540c928c6150, which is included in master and released as of hepmc3@3.2.2
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PR #17108 broke the build. Spack's ncurses package does not provide a
libtermcap, so we need to use libtinfow.
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* add package evtgen
fix formatting
add evtgen dependencies and update pythia8
fix formatting
* [evtgen] update versions
* [pythia8] add 'without-PACKAGE' args
* fix formatting
* Add LHAPDF
Co-authored-by: iarspider
* Add package whizard
fix formatting
* [pyhtia8, evtgen] add conflict msg re: circular dependencies
* [pyhtia8, evtgen] fix conflicts
* [pyhtia8, evtgen] fix msg string
* Set pythia8 default to ~evtgen
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* [py-macs2] Combined commit
- Added version 2.1.3.3
- added dependency py-cython
Author: Jen Herting <jen@herting.cc>
Date: Tue May 26 16:41:28 2020 -0400
[py-macs2] added sha256=
Author: Andrew Elble <aweits@rit.edu>
Date: Tue Oct 29 10:34:33 2019 -0400
migrated repos
* [py-macs2] fixed copyright
* [py-macs2] py-cython is build dependency
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* add initial optimization script
* integrate optimization in spack ci
* make optimization opt-in
* fix import error
* flake8 fixes
* update command completion
* work around vermin errors
* fix sphynx errors
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* swig: revise 'autotools' automated 'config.*' update mechanism to support 'config.sub' and adapt 'swig' accordingly
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Extended the list of maintainers
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* Fix how the Conduit detects that the MPI compiler is the same as the
CC compiler and is more careful when it sets the MPI compilers to be
the Cray PE system compilers.
* Remove unnecessary push of the MPI compilers to the C compilers for Hydrogen.
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Compiling delphes with default root cxxstd=11 fails, see e.g. https://sft.its.cern.ch/jira/si/jira.issueviews:issue-html/ROOT-9492/ROOT-9492.html
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Co-authored-by: iarspider <iarpsider@gmail.com>
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* Fix error when fortran is not defined
* Guard more ~fortran cases
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* Updated slate package to use new git repo. Added maintainer.
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* Added version 8.2.0, added dependency for documentation build, added variants for documentations
* Renamed variant '+man' to '+html'
Co-authored-by: Alexander Knieps <a.knieps@fz-juelich.de>
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Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
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* Fetching from urls: Error Message
Fix the error message when fetching from consecutive `urls` of a
package version. Each fail should show the currently failing URL,
not the first url.
Example multi-problem run that occured in real life:
```
==> 5821: Installing util-macros
curl: (28) Connection timed out after 10000 milliseconds
curl: (16) Error in the HTTP2 framing layer
curl: (22) The requested URL returned error: 403 Forbidden
==> Fetching https://www.x.org/archive/individual/util/util-macros-1.19.1.tar.bz2
==> Failed to fetch file from URL: https://www.x.org/archive/individual/util/util-macros-1.19.1.tar.bz2
Curl failed with error 28
==> Fetching https://mirrors.ircam.fr/pub/x.org/individual/util/util-macros-1.19.1.tar.bz2
==> Failed to fetch file from URL: https://www.x.org/archive/individual/util/util-macros-1.19.1.tar.bz2
Curl failed with error 16
==> Fetching http://xorg.mirrors.pair.com/individual/util/util-macros-1.19.1.tar.bz2
==> Failed to fetch file from URL: https://www.x.org/archive/individual/util/util-macros-1.19.1.tar.bz2
URL https://www.x.org/archive/individual/util/util-macros-1.19.1.tar.bz2 was not found!
==> Fetching from https://www.x.org/archive/individual/util/util-macros-1.19.1.tar.bz2 failed.
==> Error: FetchError: All fetchers failed for spack-stage-util-macros-1.19.1-se2a2e74oyusj2r4esgcb7pr3qhh45ef
```
- `urls[0]`: HTTP2 layer error
- `urls[1]`: timeout
- `urls[2]`: missing file on mirror
* x.org: two more mirrors
x.org mirrors are a bit tricky, since many are out-of-sync or off.
A good package to test with is `util-macros`, which had a "recent"
release.
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* glib: fix 2.56 build with python@2
* flake8
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* python: fixing patch issue for 2.7.X, 3.7.X versions (#17128)
* python: fixing the C/C++ 'distutils' patching for @3.7.0:3.7.1
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Co-authored-by: Gregory Becker <becker33.llnl.gov>
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gcc@10: defaults to -fno-common, which breaks slurm up to version
20-02-1. For more details, see https://gcc.gnu.org/gcc-10/porting_to.html
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