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2017-11-17siesta: new package (#6346)Michael Kuron1-0/+78
* siesta: new package * siesta: use libs instead of ld_flags everywhere
2017-11-17Mpi4py update (#6342)Stephen Hudson1-2/+3
2017-11-17hepmc: fix hash and urls, add new version 3.0.0 (#6348)Javier Cervantes1-1/+9
2017-11-17Add cluster.2017.5 and cluster.2018.1. (#6349)健美猫1-0/+4
2017-11-17r-rvcheck: Create new package. (#6351)lingnanyuan1-0/+36
2017-11-17r-gosemsim: Create new package. (#6352)lingnanyuan1-0/+45
2017-11-17r-do-db: Create new package. (#6353)lingnanyuan1-0/+37
2017-11-17r-fgsea: Create new package. (#6354)lingnanyuan1-0/+45
2017-11-17r-clusterprofiler: Create new package. (#6356)lingnanyuan1-0/+47
2017-11-17Added libhio 1.4.0.0 (#6357)sknigh1-0/+1
2017-11-16NuT: Add Installation of lib and demo app (#6341)Brian Homerding1-2/+5
2017-11-16Add UFO and dependencies (#6337)Matthias Vogelgesang3-0/+115
* Add json-glib * Add ufo-core * Add ufo-filters
2017-11-16add package py-numba (#6323)healther2-0/+79
* add package py-numba * Update package.py * Update package.py * Update package.py
2017-11-16meraculous: new package (#6292)Audrey Thoma2-0/+84
* meraculous: new package * adding gcc version conflict * Update package.py * Update package.py
2017-11-16r-rhdf5: Create new package. (#6330)lingnanyuan1-0/+43
2017-11-16r-shortread: Create new package. (#6332)lingnanyuan1-0/+55
2017-11-16r-sva: Create new package. (#6333)lingnanyuan1-0/+41
2017-11-16Minor package fixes (#6334)David Hows2-3/+12
* Add no-implicit-fallthrough to MsgpackC * Add 0.2.1 of Neovim * Lint
2017-11-15Reduce the calls to the python interpreter during initialization (#6312)Massimiliano Culpo1-3/+10
* Reduce the calls to the python interpreter during initialization This should reduce the delay the users experience when sourcing the setup file to activate shell support. It works by generating at once all the commands that needs to evaluated (they are stored in a string and later `eval`ed by the shell). * setup_env.sh: changed `read` with an equivalent magic For some reason `read` breaks when sourced from a running script. Change the incantation we use to construct the unique python command that will be evaluated. * setup_env.sh: python command now constructed with `printf` for portability This recovers the support for `zsh` that was broken in previous commits.
2017-11-15py-petsc4py: Update version to 3.8.0 and add dependencies (#5792)Stephen Hudson1-1/+6
* py-petsc4py: Update version to 3.8.0 and add dependencies - Added explicit dependency on python and numpy * Kept old version - and corrected minimal python version * Update to 3.8.1
2017-11-15cp2k: add dependency on smm and libxc & new version 5.1 (#6194)baip1-27/+81
* cp2k: add libxsmm dependency * cp2k: add libxc dependency * cp2k: add smm variant to select from libxsmm or libsmm * cp2k: add version 5.1
2017-11-15git grep --files-with-matches github.com/llnl/spack | xargs sed -i ↵Christoph Junghans16-16/+16
'/github.com/s@llnl/spack@spack/spack@' (#6329)
2017-11-15intel: add 2018.1 (#6322)Denis Davydov4-0/+8
2017-11-15xtensor, xtl, xsimd (#6315)Axel Huebl3-0/+137
Adds the QuantStack libs (C++, header-only) needed for xtensor.
2017-11-15r-janitor: created new package (#6313)Yifan Zhu1-0/+49
2017-11-15r-dbplyr: created new package (#6311)Yifan Zhu1-0/+48
2017-11-15Open MPI: add 2.0.4 release to package file (#6310)Howard Pritchard1-0/+1
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2017-11-15Update pgi to 17.10 . (#6306)健美猫1-0/+1
2017-11-15Update for 'magics' and 'libemos'. (#6275)Sergey Kosukhin2-50/+95
2017-11-15Fix truncated error messages in directives (#6320)scheibelp1-4/+4
Fixes #6299 Error messages in 'directives' were split across multiple lines and not properly concatenated, which led to truncated messages.
2017-11-15Allow openblas to build on a VM (#6258)Benedikt Riedel1-1/+15
This adds a "virtual_machine" boolean variant which adds build options that enable building openblas on a VM.
2017-11-14picard: add versions and fix url format (#6309)Eric1-4/+17
2017-11-14likwid: Fix hash for 4.3.0 (#6307)Michael Kuhn1-2/+3
Prefer 4.2.1 for now because 4.3.0's hash changes regularly.
2017-11-14Update miniconda to 4.3.30. (#6233)健美猫2-0/+2
2017-11-14Add the latest version of Lmod (#6297)Adam J. Stewart1-0/+1
2017-11-14py-h5py: make sure to depend on the hl variant of hdf5 (#6304)koebbe1-1/+1
2017-11-14update trilinos checksums (#6301)vishalkenchan1-11/+11
2017-11-14ncl: Check for ncl binary after installation (#6298)Michael Kuhn1-0/+2
ncl's build system will happily continue in case of errors, which might result in the ncl binary not being built.
2017-11-14icu4c: Update to 60.1 (#6295)Michael Kuhn1-0/+1
Previous versions try to include xlocale.h, which fails on glibc >= 2.26.
2017-11-14r-forcats: created new package (#6291)Yifan Zhu1-0/+41
2017-11-14libbson, libmongoc: Update to 1.8.1 (#6290)Michael Kuhn2-3/+8
2017-11-14trimgalore: add version 0.4.5 (#6288)Eric1-0/+1
2017-11-14r-mnormt: created new package (#6287)Yifan Zhu1-0/+40
2017-11-14r-bindr: created new package (#6285)Yifan Zhu1-0/+36
2017-11-13r-glue: created new package (#6283)Yifan Zhu1-0/+39
2017-11-13relion 2.1 - update variant defaults (#6201)Douglas Duckworth1-2/+2
Default precision should be double for CPU. Generally users also want to use GPUs so the +cuda variant is now also enabled by default.
2017-11-13Added an issue template for Github (#6205)Massimiliano Culpo1-0/+36
The MD file has been added in the root folder, as CONTRIBUTING.md
2017-11-13mpibash: move to autotools (#6253)Christoph Junghans2-20/+20
2017-11-13ucx: initial commit (#6265)Christoph Junghans2-0/+43
2017-11-13ont-albacore: add version 2.1.2 (#6278)Eric1-0/+1