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2017-04-06set_executable can set S_IX{GRP,OTH} (#3742)George Hartzell1-2/+8
`set_executable` now checks if a user/group.other had read permission on a file and if it does then it sets the corresponding executable bit. See #1483.
2017-04-06Correct uninstall -d to uninstall -R in tutorial (#3740)Max Katz1-2/+2
-d was changed to -R as of PR #1917
2017-04-06libSplash & PNGwriter: CMakePackage (#3739)Axel Huebl2-18/+2
Use new CMakePackage base class
2017-04-06Fix wx (#3734)Michael Kuhn1-0/+1
It is missing a pkg-config dependency.
2017-04-06PNGwriter: 0.6.0 (#3732)Axel Huebl1-0/+1
Adds the latest release of PNGwriter.
2017-04-06Fix libdwarf/elfutils conflictTodd Gamblin1-0/+5
2017-04-06A new package: xqilla. (#3731)健美猫1-0/+56
2017-04-06Openmpi cuda support (#3725)Jimmy Tang2-2/+14
* Update cuda to latest ga2 release * Add CUDA support to openmpi * Use spec's lib directories for cuda * flake8 compliance
2017-04-06Add zip package (#3715)Michael Kuhn2-0/+47
2017-04-06Fix magics (#3721)Michael Kuhn1-0/+6
- magics requires perl and perl-xml-parser. - xml2cc_new.pl uses /usr/bin/perl by default.
2017-04-05Update copyright on the docs. (#3718)Todd Gamblin1-2/+2
2017-04-05spack create MakefilePackage (#3710)Adam J. Stewart2-26/+38
* spack create MakefilePackage * Change default Perl template to match other build systems
2017-04-05Fixes patch paths for earlier boost versions (#3712)Josh Asplund2-1/+44
* Fixes patch paths for earlier boost versions The directory structure of boost changed at version 1.56.0, so the patch being used for python support did not work on earlier versions. This adds another patch that matches earlier versions. * Removes commented out code
2017-04-05Fixes needed to build htop (#3691)Adam J. Stewart6-5/+10
* Fixes needed to build htop * Build libncursesw.so, not libncurses.so * Remove htop hack now that it is picking up newer ncurses * Tell packages to link to new ncursesw libraries
2017-04-05subversion: provide checksums for versions 1.8.17 and 1.9.5 (#3663)Milton Woods1-1/+3
* subversion: provide checksums for versions 1.8.17 and 1.9.5 * subversion: release versions sorted from newest to oldest
2017-04-05petsc trilinos: fix Scalapack via MKL (#3702)Denis Davydov2-3/+16
* petsc trilinos: fix Scalapack via MKL * indentation
2017-04-05update versions for scalasca and related tools (#3697)Mark Olesen4-64/+59
- clean up fetch urls - inherit from AutotoolsPackage instead of Package - explicit fPIC flags look suspicious, but leave them in there. - in scalasca, use the cube version that is implicit from the scorep dependency instead of specifying it twice.
2017-04-05Fix libxpm (#3704)Michael Kuhn1-0/+5
It tries to use gettext but fails because it does not explicitly link against libintl.
2017-04-05Fix ncl (#3708)Michael Kuhn2-1/+23
- Add patch to make ncl compile with hdf5 1.10. - Add missing dependencies to make ncl compile without errors.
2017-04-05Merge pull request #2789 from ↵scheibelp6-22/+112
paulhopkins/features/allow_package_installation_directory_to_be_configured Allow installation directory layout to be configured
2017-04-05Add stress package (#3695)Adam J. Stewart1-0/+37
2017-04-05Add versions 3.2.0 3.1.0 for protobuf. (#3698)健美猫1-7/+9
2017-04-05Allow installation directory layout to be configured using either hashPaul Hopkins6-22/+112
length parameter or spec formatting.
2017-04-04Add package for open source Shiny Server (#3688)George Hartzell1-0/+77
* The beginnings of a package for shiny-server Just stashing a WIP. This doesn't work. This goes for a while and/but blows up with some OpenSSL related issue. * Make it work! Yay! * shiny-server needs R with X support My environment gets this for "free" from my packages.yaml, but it should be explicity. * Address feedback - python version - gcc dependency - Flake8 comment rules * Richer caveats and warnings. * Convert to CMakePackage and fix python version typo * Fix typo: noqab -> noqa * Ensure proper build location, clean up comments
2017-04-04Avoid null reference in arch concretization (#2596)scheibelp1-3/+18
Fixes #2587 The concretizer falls back on using the root architecture (followed by the default system architecture) to fill in unspecified arch properties for a spec. It failed to check cases where the root could be None.
2017-04-04Convert STREAM to MakefilePackage (#3692)Adam J. Stewart1-4/+2
2017-04-04Add fio package (#3689)Adam J. Stewart1-0/+56
2017-04-04intel-mkl: add 2017.2 (#3687)Denis Davydov1-15/+7
* intel-mkl: add 2017.2 * intel-mkl: add urls, update docstring
2017-04-04Fixes #3675: Abinit: invalid spec on concretization #(3686)Massimiliano Culpo1-1/+1
2017-04-04Update SymEngine package to enable build against LLVM (#3682)Jean-Paul Pelteret1-2/+7
2017-04-04Cppcheck (#3684)Mayeul d'Avezac1-1/+5
* Adds cppcheck version 1.72 * cppcheck installation requires cfg files Without these files, cppcheck does not work correctly
2017-04-04Update tinyxml (#3649)Mayeul d'Avezac1-1/+2
* Update tinyxml * url seems to have changed * spack replaces "_2_6_2" with "_2.6.2" unless the url is explicitly given * copyfile is no longuer available by default * URL version-parsing should work as of #2972
2017-04-04Update getting_started.rst (#3685)Justin Cook1-1/+1
Fixed typo referring to .bashrc file
2017-04-03Add IOzone package (#3679)Adam J. Stewart1-0/+53
2017-04-03Overhaul Spack's URL parsing (#2972)Adam J. Stewart80-807/+1325
* Remove fake URLs from Spack * Ignore long lines for URLs that start with ftp: * Preliminary changes to version regexes * New redesign of version regexes * Allow letters in version-only * Fix detection of versions that end in Final * Rearrange a few regexes and add examples * Add tests for common download repositories * Add test cases for common tarball naming schemes * Finalize version regexes * spack url test -> spack url summary * Clean up comments * Rearrange suffix checks * Use query strings for name detection * Remove no longer necessary url_for_version functions * Strip off extraneous information after package name * Add one more test * Dot in square brackets does not need to be escaped * Move renaming outside of parse_name_offset * Fix versions for a couple more packages * Fix flake8 and doc tests * Correctly parse Python, Lua, and Bio++ package names * Use effective URLs for mfem * Add checksummed version to mitos * Remove url_for_version from STAR-CCM+ package * Revert changes to version numbers with underscores and dashes * Fix name detection for tbb * Correctly parse Ruby gems * Reverted mfem back to shortened URLs. * Updated instructions for better security * Remove preferred=True from newest version * Add tests for new `spack url list` flags * Add tests for strip_name_suffixes * Add unit tests for version separators * Fix bugs related to parseable name but in parseable version * Remove dead code, update docstring * Ignore 'binary' at end of version string * Remove platform from version * Flip libedit version numbers * Re-support weird NCO alpha/beta versions * Rebase and remove one new fake URL * Add / to beginning of regex to avoid picking up similarly named packages * Ignore weird tar versions * Fix bug in url parse --spider when no versions found * Less strict version matching for spack versions * Don't rename Python packages * Be a little more selective, version must begin with a digit * Re-add fake URLs * Fix up several other packages * Ignore more file endings * Add parsing support for Miniconda * Update tab completion * XFAILS are now PASSES for 2 web tests
2017-04-03Add latest version of pkg-config (#3672)Adam J. Stewart1-16/+16
2017-04-03openfst conflicts with intel@16: and gcc@6: . (#3671)健美猫1-10/+5
2017-04-03Fix conflict directives for libpfm4. (#3673)健美猫1-1/+1
2017-04-03Add latest alpha release of MVAPICH2 (#3674)Adam J. Stewart1-1/+6
2017-04-03Add depends_on() new-ish bison (#3661)George Hartzell1-0/+1
* Add depends_on() new-ish bison * Refine dependency, only needed to build.
2017-04-03Add libpfm4 package. (#3667)健美猫1-0/+48
2017-04-03add CUDA_HOME arg to nccl makefile (#3666)Jeffrey Salmond1-0/+4
2017-04-03add gflags as dependency of glog (#3665)Jeffrey Salmond1-0/+2
2017-04-02Hey, I was using that! :) (#3660)George Hartzell1-0/+3
Turns out that we really want 5.22.2 for backward compatibility.
2017-04-02Set default providers for all virtual dependencies (#3634)Adam J. Stewart4-6/+19
* Set default providers for everything * Add default OpenFOAM provider
2017-04-02new directive: conflicts() (#3125)Massimiliano Culpo7-1/+193
* Add conflicts(<spec>) directive * openblas: added conflicts for intel@16 refs #3119 * added brief docs and unit tests
2017-04-01Add epigraph in docs.Todd Gamblin1-1/+5
2017-04-01Add better tests for web.py; fix some bugs found with spidering.Todd Gamblin27-67/+306
- _spider in web.py was actually failing to spider deeper than a certain point. - Fixed multiprocessing pools to not use daemons and to allow recursive spawning. - Added detailed tests for spidering and for finding archive versions. - left some xfail URL finding exercises for the reader. - Fix noqa annotations for some @when decorators
2017-04-01Fix Python 3 support in spack versionsAdam J. Stewart2-4/+5
- Add missing import, fixes spack versions in Python 2 - Fix spack versions in Python 3
2017-04-01fix version specs for EasyBuild packages (#3659)Kenneth Hoste3-3/+3
* fix Python version requirement for easybuild-framework * make 'when' for depends_on('py-easybuild-framework') open-ended
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