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2019-12-11doxygen: Fix libiconv checks (#14106)Michael Kuhn1-0/+10
PR #10589 introduced a libiconv dependency to doxygen. This causes problems on Linux systems, since the iconv symbols are included in libc, which causes CMake to use the external header but not the external library. Work around this by always using the external libiconv.
2019-12-11Build xed CLI for the intel-xed package (#14114)Glenn Johnson1-2/+6
The xed CLI is handy, and can be gotten by building the examples in the intel-xed package. This PR builds the examples and installs the xed CLI. It would also be possible to install more of the example binaries if someone thinks they are useful.
2019-12-11openfoam relocated to https://develop.openfoam.com/Development/openfoam.git ↵Mark Olesen1-3/+3
(#14101)
2019-12-11 diamond: fix narrowing error. (#14064)noguchi-k2-0/+22
* diamond: fix narrowing error * diamond: fix patch * diamond: add link to the patch source
2019-12-11Fix py-pkgconfig recipe (#14081)iarspider1-2/+4
* Fix py-pkgconfig recipe * Update package.py * Proper fix for py-pkgconfig
2019-12-11Fix py-pathos source file extension (#14080)iarspider1-5/+16
* Fix py-pathos source file extension * PEP-8 fix * Add version 0.2.3 to spack * Update package.py
2019-12-11Fix py-llvmlite (#14083)iarspider1-1/+5
* Fix py-llvmlite * Update package.py * Add llvmlite 0.29 * Update package.py
2019-12-11Fix py-dill source archive extension (#14085)iarspider1-1/+13
* Fix py-dill source archive extension * Add py-dill 0.2.7, remove extra str() * Update package.py * Update package.py * Update package.py
2019-12-11llvm: fix for building llvm using Cray PE (#12734)Howard Pritchard1-2/+4
Signed-off-by: Howard Pritchard <hppritcha@gmail.com>
2019-12-10Fix json-c package (#14087)iarspider1-1/+2
* Fix json-c package * Fix PEP-8 * Update package.py * Update package.py
2019-12-10Fix libgeotiff dependency of gdal (#14089)iarspider1-3/+3
* Fix libgeotiff dependency of gdal * Update package.py * Fix typo * Update package.py
2019-12-10openmolcas: new package at 19.11 (#14099)Justin S1-0/+37
* openmolcas: new package at 19.11 * openmolcas: fill description * openmolcas: rewrite using CMakePackage * openmolcas: add py-six dep * openmolcas: use setup_build_environment, setup_run_environment * openmolcas: remove redundant cmake dep * openmolcas: explicitly cast Executable to str
2019-12-10pytest: add __init__ files for all test subdirs (#13889)Greg Becker5-6/+22
* pytest: add __init__ files for all test subdirs * add licenses to empty files * Fix Sphinx warning message about comment within docstring * Further fixes to Sphinx docstring
2019-12-10Alternative locations for tclConfig and tkConfig (#14071)iarspider1-0/+6
* Alternative locations for tclConfig and tkConfig * Fix PEP-8
2019-12-10Update tmux to 3.0a (#14096)Eric Berquist1-0/+2
* Add tmux@2.9 and tmux@3.0a * Fix checksums
2019-12-10Better error message when setting unknown variants during concretization ↵Massimiliano Culpo3-8/+17
(#13128) fixes #13124
2019-12-10gromacs-2018.8: fix checksum (#14069)Christoph Junghans1-1/+1
2019-12-10ROOT: +http variant doesn't require any external dependency (#14072)iarspider1-1/+0
2019-12-10Fix py-pyasn1 version for py-pyasn1-modules (#14076)iarspider1-1/+3
2019-12-10Fix for DD4Hep build: can't find boost (#14091)iarspider1-1/+3
2019-12-10More variants for cairo (#14092)iarspider1-3/+13
2019-12-10openfoam-org: Adding openfoam-org versions 6 and 7. (#12859)Simo Tuomisto1-1/+25
This commit adds openfoam-org versions 6 and 7. It also adding new variant for metis and fixes openfoam-org's old environment modification functions.
2019-12-09intel-tbb: fix and cleanup patch version ranges (#14053)Mark W. Krentel1-16/+11
Recent commit e9ee9eaf (#13989) fixed testing version ranges inside patch when clauses. Previously, it was necessary to write all revs individually for packages with multiple length version numbers (2019 and 2019.1). This fixes the build for the old 2017.* versions.
2019-12-09Follow up/11117 fixes and testing (#13607)Omar Padron10-158/+272
* fix docstring in generate_package_index() refering to "public" keys as "signing" keys * use explicit kwargs in push_to_url() * simplify url_util.parse() per tgamblin's suggestion * replace standardize_header_names() with the much simpler get_header() * add some basic tests * update s3_fetch tests * update S3 list code to strip leading slashes from prefix * correct minor warning regression introduced in #11117 * add more tests * flake8 fixes * add capsys fixture to mirror_crud test * add get_header() tests * use get_header() in more places * incorporate review comments
2019-12-09environments: allow 'add' command to add virtuals (#13787)Greg Becker2-2/+26
This PR allows virtual packages to be added to the specs list using the add command. Virtual packages are already allowed in named lists in spack environments/stacks, and they are already allowed in the specs list when added using the yaml directly.
2019-12-09TensorFlow: don't override HOME env var (#14054)Adam J. Stewart1-4/+4
2019-12-09fix incorrect gpu arch map for vtk-m package (#14057)Matt Larsen1-1/+1
2019-12-09Apply URLFetchStrategy to ftp:// and ftps:// url schemes (#13939)Andras Wacha1-1/+3
* Apply URLFetchStrategy to ftp:// and ftps:// url schemes * Corrected trailing whitespace error
2019-12-08Tuneup docs re setting up sphinx for building docs (#14005)George Hartzell1-6/+14
I have, more than once, tried to install the list of things that need to build the docs, only to discover that the list doesn't use Spack's package names. I'm tired of facepalming.... While I was there I touched up the prose about activating the new Python packages; activating a python package doesn't add anything to your PYTHONPATH, it links things into a directory that's *already* on your PYTHONPATH. Note that this all presupposes that you're using that same python....
2019-12-08cbtf-krell: fix missing dependencies (#14021)Adam J. Stewart1-4/+4
2019-12-08Add new r-condop package (#14050)Adam J. Stewart1-0/+32
2019-12-08Add new r-earth package (#14049)Adam J. Stewart1-0/+25
2019-12-08Add new r-plotmo package (#14048)Adam J. Stewart1-0/+26
2019-12-08Add new r-teachingdemos package (#14047)Adam J. Stewart1-0/+20
2019-12-08Add new r-graphlayouts package (#14046)Adam J. Stewart1-0/+27
2019-12-08Add new r-tidygraph package (#14045)Adam J. Stewart1-0/+32
2019-12-08py-torch: comment out non-existing deps (#14044)Adam J. Stewart1-3/+3
2019-12-08Add new py-requests-mock package (#14043)Adam J. Stewart1-0/+19
2019-12-08py-luigi: fix test dependencies (#14042)Adam J. Stewart1-1/+1
2019-12-08elpa: port to microarch (#13655)Christoph Junghans1-19/+27
* elpa: port to microarch * flake8 * Update package.py * Update var/spack/repos/builtin/packages/elpa/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-12-08Add new py-pytest-mypy package (#14041)Adam J. Stewart1-0/+23
2019-12-08Add new py-sphinxcontrib-issuetracker package (#14040)Adam J. Stewart1-0/+19
2019-12-08py-python-htmlgen -> py-htmlgen (#14039)Adam J. Stewart2-6/+4
2019-12-08Add new py-asserts package (#14038)Adam J. Stewart1-0/+21
2019-12-07py-brian2: py-nosetests -> py-nose (#14037)Adam J. Stewart1-17/+20
2019-12-07polymake: fix dependency name (#14034)Adam J. Stewart1-1/+1
2019-12-07Add py-jupyter package (#14035)Adam J. Stewart1-0/+22
2019-12-07Add new py-wxmplot package (#14036)Adam J. Stewart1-0/+24
2019-12-07Add new py-stestr package (#14029)Adam J. Stewart1-0/+18
2019-12-07Add new py-testrepository package (#14030)Adam J. Stewart1-0/+28
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