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2020-07-31py-torchvision: add v0.7.0Adam J. Stewart1-7/+28
2020-07-31PyTorch: add v1.6.0Adam J. Stewart1-0/+2
2020-07-31Pandas: add v1.1.0Adam J. Stewart1-1/+5
2020-07-31cp2k: support for aarch64 (#17786)darmac1-0/+4
2020-07-31LBANN: add versions, update CUDA support and dependencies (#17813)Brian Van Essen5-28/+58
* Update LBANN, Hydrogen, Aluminum to inherit CudaPackage * Update CMake constraints: LBANN, Hydrogen, and Aluminum now require cmake@3.16.0: (better support for pthreads with nvcc) * Aluminum: add variants for host-enabled MPI and RMA features in a MPI-GPU RDMA-enabled library * NCCL: add versions 2.7.5-1, 2.7.6-1, and 2.7.8-1 * Hydrogen: add version 1.4.0 * LBANN: add versions 0.99 and 0.100 * Aluminum: add versions 0.4.0 and 0.5.0
2020-07-31new package(s): py-gql (#17769)Andrew W Elble9-3/+169
* new package(s): py-gql and related dependencies: py-aiohttp py-async-timeout py-graphql-core py-idna-ssl py-multidict py-websockets py-yarl new versions: py-requests * fixes Co-authored-by: Andrew W Elble <aweits@skl-a-00.rc.rit.edu>
2020-07-31libxc: Add version 4.3.4. (#17781)Rémi Lacroix1-0/+1
2020-07-31Add new package: mongodb-async-driver (#17787)darmac1-0/+24
2020-07-31open-iscsi: refine runtime environment (#17789)darmac1-0/+4
2020-07-31environment-modules: add version 4.5.2 (#17795)Xavier Delaruelle1-1/+2
2020-07-31Add Rust versions 1.45.1 and 1.44.1 (#17812)Andrew Gaspar1-0/+14
2020-07-31Alluxio (package): update url, add versions (#17805)darmac1-7/+10
* Add versions 2.2.1 and 2.2.0 * Remove version 2.1.0 * Add dependency on Java
2020-07-31py-mixedhtseq: new package at 0.1.0 (#17702)Justin S1-0/+39
* py-mixedhtseq: new package at 0.1.0 * py-mixedhtseq: flake8 fixes
2020-07-31py-gpy: add 0.8.8 (#17548)Justin S1-2/+3
* py-gpy: add 0.8.8 * py-gpy: remove unneeded dep * py-gpy: make cython build-only
2020-07-31NWChem 7.0.0 (#17779)Edoardo Aprà1-11/+22
* NWChem 7.0.0 * add python2 for 6.8.1. removed 6.8 https://github.com/spack/spack/pull/17779#discussion_r462700413 * nwchem 6.8.1 breaks with gcc 10 and later * restored extra python bits for version 6.8.1. add env. definition of basis libraries * changes for flake8 * url fixed * prevent 6.8.1 being compiled with gcc 10
2020-07-31new package(s): py-torch-geometric (#17768)Andrew W Elble3-0/+80
* new package(s): py-torch-geometric (with related dependencies: py-rdflib, py-googledrivedownloader) * fixes
2020-07-31sphinx copybutton: new package at v0.2.12 (#17632)Claire Guilbaud1-0/+18
2020-07-31recommonmark: new package at v0.6.0 (#17629)Claire Guilbaud1-0/+24
2020-07-30Improve Ferret package (#17620)Rémi Lacroix1-47/+159
* Ferret: Add missing dependency with curl. * Ferret: Don't force using the static version of libgfortran. * Ferret: Ensure Spack's compiler wrappers are used. This allows properly setting the rpaths. * Ferret: Add support for versions 7.3 to 7.6. * Ferret: Add a variant to install Ferret standard datasets. * Ferret: Define some useful runtime environnement variables. * Ferret: Fix flake8. Also add myself as a maintainer as suggested by @alalazo.
2020-07-30kahip: Fix issue #17638 (make SConstruct files python3 friendly) (#17642)Tom Payerle3-0/+140
As discussed in issue #17638, wherein kahip fails to build when scons is dependent on python@3. This converts the print statements in various SConstruct files into python3 friendly print functions. I found most of the affected SConstruct files in both @2.00 and the later versions I found on web, but some files were only in @2.00. I split the patches into two files for that reason, but have not tried the later versions.
2020-07-30New Versions: dd4hep, podio (#17659)vvolkl2-9/+5
* [dd4hep] add new patch version * [podio] add new version and update env vars * [dd4hep] add hepmc3 variant
2020-07-30Update LAMMPS package (#17715)Rémi Lacroix1-3/+6
* LAMMPS: Use LATTE 1.2.2 starting with version 20200602. Version 20200602 and upper requires Latte 1.2.2. This caused the internal Latte distribution to be used instead of the Latte install provided by Spack. * LAMMPS: Add new versions 20200630 and 20200721.
2020-07-30dcmtk: fixed type error (#17758)ketsubouchi1-0/+10
* dcmtk: fixed type error * Update var/spack/repos/builtin/packages/dcmtk/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-07-30New package: IDL (#17451)Francine Lapid1-0/+41
* New package: IDL * Update var/spack/repos/builtin/packages/idl/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/idl/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * added license header and changed url_for_version to just url * removed unused imports, addressed comments * removed trailing whitespace on line 14 Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-07-30mozjs@1.8.5: fix compile issue (#17594)darmac3-2/+187
* mozjs@1.8.5: fix compile issue * mozjs: refine method
2020-07-30vtk: Support for new option to enable MPI. (#17727)Tomoki, Karatsu1-5/+10
2020-07-30backport Mesa MR#6053 to prevent multiply-defined symbols (#17720)Daryl W. Grunau2-0/+25
Co-authored-by: Daryl W. Grunau <dwg@lanl.gov>
2020-07-30Fixing problems caused by a comfused spack concretizer (#17797)G-Ragghianti1-1/+3
2020-07-30Add variants to squashfs for different compression algorithms (#17755)Harmen Stoppels1-2/+30
2020-07-30New package: py-uvw (#17719)Lucas Frérot1-0/+28
* py-uvw: added package for versions 0.0.7 and 0.3.1 * py-uvw: added py-setuptools as dependency
2020-07-30flang: make sure to find libstdc++ if needed (#17480)Dr Owain Kenway2-0/+10
2020-07-30Python: added v3.8.4, v3.8.5, v3.7.7, v3.7.8, v3.6.11 (#17775)Adam J. Stewart1-2/+9
Also added older version in the 3.6 and 3.5 series
2020-07-30MAGMA isn't compatible with CUDA 11 (#17753)G-Ragghianti1-0/+1
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-07-30slate package: resolve issues with cuda version and fortran compiler name ↵G-Ragghianti1-3/+6
(#17759) Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-07-30couchdb: new package at v3.1.0 (#17595)darmac1-0/+41
2020-07-30lhapdf5: new package at v5.9.1 (#17746)Wouter Deconinck1-0/+46
During configure lhapdf5 searches for python. On one system I tested on (ubuntu 19.10) it finds a system installed python3 and fails to create the python extension. Variant named to make explicit that this is only a python2 extension.
2020-07-30latte: added v1.2.2 and master (#17714)Rémi Lacroix1-1/+2
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-07-30zipkin: new package at v2.21.5 (#17780)darmac1-0/+28
2020-07-29New package: r-hh (#17667)Glenn Johnson1-0/+46
* New package: r-hh * Add short description Add the project one liner for a short description that will be used for `module whatis`.
2020-07-29Updated iq-tree package (#17690)ilbiondo1-3/+5
2020-07-29Intel packages: new versions (#17692)Robert Mijakovic8-0/+15
* update version: intel packages daal, ipp, mkl-dnn, mkl, mpi, parallel-studio, pin, tbb and makes url parameter consistent and always use single quote. * Fixes a typo with one of the sha256 checksum.. * Adds version entries for new versions of Intel packages. * Adds hashes for new versions of Intel packages. * Adds missing hash of Intel compiler. * Adds the newest version of Intel MPI 2019.8. * Fixes hash for intel-parallel-studio and intel-tbb. * Fixes version number of Intel MPI. Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2020-07-29CMake: Fix compilation with Intel compilers on some systems. (#17693)Rémi Lacroix2-0/+15
Systems with older GNU compilers were not affected. This commit fixes #15901 and fixes #17605.
2020-07-29pgi: update to 20.4 (#17696)Tiziano Müller1-0/+1
2020-07-29libmodbus: new package (#17778)Shayna Kapadia1-0/+26
* libmodbus:adding new package * fixing testing failures * fixing flake 8 errors * fixing flake 8 errors Co-authored-by: Kapadia <kapadia2@llnl.gov>
2020-07-29update version to 1.1.5 (#17701)Rao Garimella1-1/+2
Co-authored-by: Rao Garimella <rao@abyzou.lanl.gov>
2020-07-29use libquadmath only x86_4 and ppcle. (#17728)Toyohisa Kameyama1-0/+11
2020-07-29openfoam package updates, scotch version update (#17731)Mark Olesen2-7/+11
* openfoam: use MPI 'headers' property (fixes #17730) * openfoam: +spdp variant, usable for OpenFOAM 1906 and later in contrast to +float32, which uses single-precision throughout, +spdp uses the following: - single-precision for most internals - double-precision for linear solver * openfoam: add m4 as build dependency * scotch: update to 6.0.9 released Oct 2019 Co-authored-by: Mark Olesen <Mark.Olesen@esi-group.com>
2020-07-29CLAW: Add version 2.0.2 (#17733)Valentin Clement (バレンタイン クレメン)1-0/+1
2020-07-29New package: vgm (#17741)Wouter Deconinck1-0/+49
* [vgm] new package Virtual Geometry Model (VGM) * [vgm] Updated description
2020-07-29New package: geant4-vmc (#17745)Wouter Deconinck1-0/+34
* [geant4-vmc] New package * [geant4-vmc] aligned spacing
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