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2020-07-29[bowtie2] added version 2.4.1 (#17748)Jen Herting1-0/+1
2020-07-29Boost: Update conflicts for version 1.73.0. (#17774)Rémi Lacroix1-1/+1
Variant "+mpi+python cxxstd=98" is fixed in 1.73.0.
2020-07-29express: add cast for %fj (#17764)ketsubouchi1-0/+1
2020-07-29clamcv: Add curl dependency. (#17765)Toyohisa Kameyama1-0/+1
2020-07-29Add new package: solr (#17597)darmac1-0/+28
* Add new package: solr * refine version order
2020-07-29zlib: style changes to check if set of changed files is computed correctlyMassimiliano Culpo1-3/+2
2020-07-29Use "fetch-depth: 0" to retrieve all history from remoteMassimiliano Culpo4-10/+19
2020-07-29Simplified YAML files for Github Actions workflowsMassimiliano Culpo4-18/+7
Updated actions where needed
2020-07-29Group tests with similar duration togetherMassimiliano Culpo4-76/+72
Style and documentation tests take just a few minutes to run. Since in Github actions one can't restart a single job but needs to restart an entire workflow, here we group tests with similar duration together.
2020-07-29qt: fix build with ~ssl. (#17767)Matthias Wolf1-1/+1
OpenSSL was pulled from the spec too early, leading to failures when attempting to build with ~ssl.
2020-07-29perl: add missing berkeley-db dependency (#17771)Andrew W Elble1-0/+1
2020-07-29lmod: change variant defaults to match Lmod's defaults (#17770)Massimiliano Culpo1-2/+2
2020-07-28Amrvis: update branch name (#17718)mic841-2/+2
2020-07-28Merge tag 'v0.15.3' into developTodd Gamblin4-5/+22
2020-07-28update CHANGELOG.md for 0.15.3v0.15.3Todd Gamblin1-0/+12
2020-07-28bump version number for 0.15.3Todd Gamblin3-5/+10
2020-07-27bugfix: allow relative view paths (#17721)Greg Becker1-14/+28
Relative paths in views have been broken since #17608 or earlier. - [x] Fix by passing base path of the environment into the `ViewDescriptor`. Relative paths are calculated from this path.
2020-07-27bugfix: allow relative view paths (#17721)Greg Becker1-14/+28
Relative paths in views have been broken since #17608 or earlier. - [x] Fix by passing base path of the environment into the `ViewDescriptor`. Relative paths are calculated from this path.
2020-07-27tutorial: Add boto3 installation to setup script (#17722)Todd Gamblin1-0/+6
2020-07-27tutorial: Add boto3 installation to setup scriptTodd Gamblin1-0/+6
2020-07-27Update darshan package with mpi variant (#17717)Patrick Gartung1-6/+11
* Update darshan package with nompi variant. * Change variant to mpi and default to True
2020-07-27r-adespatial: added new package (#17700)Glenn Johnson6-0/+172
This PR adds the r-adesaptial package and several other new packages as dependencies. - r-adegraphics - r-adephylo - r-phylobase - r-rncl - r-rnexml
2020-07-27r-dss: added new package at v2.36.0 with dependencies (#17661)Glenn Johnson6-1/+93
This PR adds the r-dss package and the r-bsseq package, also new, as a dependency. This includes the latest versions, which required updates to the following dependencies: - r-biocgenerics - r-iranges - r-s4vectors - r-summarizedexperiment Older versions of r-dss and r-bsseq are included as well to ensure compatibility with older versions of the above dependencies.
2020-07-27Relocation of sbang needs to be done when the spack prefix changes even if ↵Patrick Gartung2-4/+17
the install tree has not changed. (#17455)
2020-07-27Relocate rpaths for all binaries, then do text bin replacement if the rpaths ↵Patrick Gartung1-7/+10
still exist after running patchelf/otool (#17418)
2020-07-27qt: fixed build with apple-clang (#17706)Seth R. Johnson1-0/+1
2020-07-27SciPy: added v1.5.2 (#17708)Adam J. Stewart1-1/+2
2020-07-27scons: added support to Fujitsu compilers (#17710)ketsubouchi2-8/+180
2020-07-27acts: added v0.29 (#17712)Hadrien G1-0/+1
2020-07-27openmpi: added lustre variant to openmpi (#17478)Amjad Kotobi2-1/+39
2020-07-27sphinxcontrib-mermaid: new package at v0.4.0 (#17630)Claire Guilbaud1-0/+20
2020-07-27json logger: new package at v0.1.11 (#17628)Claire Guilbaud1-0/+18
2020-07-27pygments pytest: new package at v1.2.0 (#17626)Claire Guilbaud1-0/+17
2020-07-27commonmark: new package at v0.9.0 (#17624)Claire Guilbaud1-0/+19
2020-07-27hieroglyph: new package at v1.0.0 (#17625)Claire Guilbaud1-0/+22
2020-07-27python docs theme: new package at v2020.1 (#17627)Claire Guilbaud1-0/+19
2020-07-27yolk3k: new package at v0.9 (#17635)Claire Guilbaud1-0/+22
2020-07-27sphinxcontrib trio: new package at v1.1.2 (#17631)Claire Guilbaud2-0/+32
2020-07-27sphinx gallery: new package at v0.7.0 (#17633)Claire Guilbaud1-0/+23
2020-07-27add tutorial setup script to share/spack (#17705)Greg Becker1-0/+123
* add tutorial setup script to share/spack * Add check for Ubuntu 18, fix xvda check, fix apt-get errors - now works on t2.micro, t2.small, and m instances - apt-get needs retries around it to work Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2020-07-27add tutorial setup script to share/spack (#17705)Greg Becker1-0/+123
* add tutorial setup script to share/spack * Add check for Ubuntu 18, fix xvda check, fix apt-get errors - now works on t2.micro, t2.small, and m instances - apt-get needs retries around it to work Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2020-07-26bugfix: don't redundantly print ChildErrors (#17709)Todd Gamblin2-5/+12
A bug was introduced in #13100 where ChildErrors would be redundantly printed when raised during a build. We should eventually revisit error handling in builds and figure out what the right separation of responsibilities is for distributed builds, but for now just skip printing. - [x] SpackErrors were designed to be printed by the forked process, not by the parent, so check if they've already been printed. - [x] update tests
2020-07-26bugfix: don't redundantly print ChildErrors (#17709)Todd Gamblin2-5/+12
A bug was introduced in #13100 where ChildErrors would be redundantly printed when raised during a build. We should eventually revisit error handling in builds and figure out what the right separation of responsibilities is for distributed builds, but for now just skip printing. - [x] SpackErrors were designed to be printed by the forked process, not by the parent, so check if they've already been printed. - [x] update tests
2020-07-26[root] Add version 6.22 (#17459)Hadrien G1-9/+11
* Add ROOT v6.22 * Hello xext my old friend...
2020-07-24Rename sas static-analysis-package (#17695)Patrick Gartung1-1/+1
2020-07-24Add Totalview package (#17643)Nicholas Sly1-0/+108
* Add initial totalview package. * Add maintainer and helpful comments/information. Co-authored-by: sly <sly@lanl.gov>
2020-07-24brltty (package): Add dependency on alsa-lib (#17616)t-nojiri1-0/+1
2020-07-24py-gensim (package): add version 3.8.3; update dependency constraints (#17641)Jen Herting1-3/+13
2020-07-24MPICH (package): add optional support for argobots (#17678)Matthieu Dorier1-0/+10
2020-07-24singularity: Add version 3.6.1Christian Tacke1-1/+2