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2016-06-20qa : fixed flake8 issuesalalazo1-45/+61
2016-06-20openmpi : revert part of #1079 (OpenMPI can be built without fortran)alalazo2-14/+25
Building OpenMPI without fortran is possible, and was already handled. Raising an install error we effectively renounce at clang+OpenMPI. build_environment : sets 'CC', 'CXX', and similar variables only if a compiler is found
2016-06-20Merge pull request #1052 from adamjstewart/features/psi4Todd Gamblin3-1/+118
Add Psi4 Package
2016-06-20Merge pull request #1023 from epfl-scitas/packages/mumpsTodd Gamblin2-73/+214
Corrected the shared libraries and tests in mumps package
2016-06-20Merge pull request #1059 from epfl-scitas/packages/mpi_wrappers_with_rpathTodd Gamblin3-98/+91
MPI : have wrappers set RPATH instead of RUNPATH
2016-06-20Merge pull request #1063 from eschnett/eschnett/openmpi-1.10.3Todd Gamblin1-0/+1
Update OpenMPI to 1.10.3
2016-06-20Merge pull request #1064 from LLNL/bugfix/github-1043-script-backupTodd Gamblin1-7/+1
do not create shebang.bak file
2016-06-20Merge pull request #1022 from glennpj/r-devtoolsTodd Gamblin13-0/+614
new package: r-devtools
2016-06-20Merge pull request #1021 from glennpj/packratTodd Gamblin1-0/+42
new package: r-packrat
2016-06-20Merge pull request #1000 from glennpj/new_RTodd Gamblin6-45/+79
Add version 3.3.0 of R and extensions
2016-06-20Merge pull request #1053 from davydden/pkg/dealii_suite_updateTodd Gamblin6-93/+133
update Petsc, Slepc, Trilinos, Superlu-dist and deal.II
2016-06-20Merge pull request #1081 from mathstuf/pkg-config-pathTodd Gamblin1-2/+2
modules.yaml: use the right envvar for pkg-config
2016-06-20Merge pull request #1029 from adamjstewart/features/armadilloTodd Gamblin3-16/+145
Add Armadillo and SuperLU packages
2016-06-20Merge pull request #1076 from JRWynneIII/ferretTodd Gamblin1-0/+103
Added spec to build Ferret
2016-06-20Merge pull request #1083 from robertdfrench/tmux-2.2Todd Gamblin1-5/+12
Tmux 2.2
2016-06-20Merge pull request #1079 from davydden/pkg/blas_mpi_fortranTodd Gamblin2-0/+14
require fortran compilers for Openblas and Openmpi
2016-06-20Merge branch 'bugfix/compiler_find' into developTodd Gamblin4-29/+112
2016-06-20Test no longer assumes compilers exist in /usr.Todd Gamblin1-10/+57
- makes a fake gcc instead, and tests that.
2016-06-20Tmux 2.2 with PEP8Robert.French1-5/+12
Tmux 2.2 Provide variant to skip utempter Remove utempter variant; 2.2 doesn't need it Flake8ify
2016-06-20modules.yaml: use the right envvar for pkg-configBen Boeckel1-2/+2
Fixes #1072.
2016-06-19openmpi: raise an error without Fortran compilerDenis Davydov1-0/+7
2016-06-19openblas: raise an error without Fortran compilerDenis Davydov1-0/+7
2016-06-18Adding test to list of test_namesMario Melara1-1/+1
2016-06-18Adding new tests for compiler command for spack's test suiteMario Melara1-0/+34
2016-06-18More clean up of init_config, also no need for a different find_compilers ↵Mario Melara1-7/+2
function.
2016-06-18Getting rid of no longer used init_config argMario Melara1-5/+2
2016-06-18Merge pull request #1032 from eschnett/eschnett/cc-quotesTodd Gamblin1-2/+2
Add quotes around file name
2016-06-18Merge remote-tracking branch 'upstream/develop' into developMario Melara22-115/+993
"Updating NERSC branch"
2016-06-18Got rid of init_config flag since we don't need it. Instead we update the ↵Mario Melara1-18/+22
cache config if there are any changes
2016-06-17Merge pull request #1065 from epfl-scitas/packages/espresso_updateTodd Gamblin1-6/+18
espresso : update to 5.4.0
2016-06-17Merge pull request #1060 from mathstuf/no-break-long-wordsTodd Gamblin1-1/+3
tty: do not break long words
2016-06-17Merge pull request #1044 from adamjstewart/features/sncosmoTodd Gamblin9-101/+432
Add py-sncosmo package
2016-06-17Merge pull request #1061 from mathstuf/reindex-preserve-explicitTodd Gamblin1-1/+5
reindex: preserve 'explicit' flags
2016-06-17Merge pull request #946 from LLNL/features/intel2Todd Gamblin7-5/+365
Intel software packages and license enhancements
2016-06-17Python flake8 overhaulAdam J. Stewart1-76/+114
2016-06-17Added working Ferret specRobert D. French1-0/+103
Fixed ferret spec. It builds now Made ferret spec more flake8-y Fixed homepage and info text about Ferret Removed vim swap file Reverted changes to netcdf-fortran spec and added netcdf~mpi dependency to ferret spec to compensate for it Fixed flake8 issues!
2016-06-17'find and 'add' are options for adding compilers via command lineMario Melara1-7/+7
2016-06-17Fix activation of sites.py for sncosmoAdam J. Stewart4-8/+15
2016-06-17Add additional Astropy dependenciesAdam J. Stewart3-7/+89
2016-06-17Remove version constraintsAdam J. Stewart5-13/+9
2016-06-17Allow packages to buildAdam J. Stewart4-13/+9
2016-06-17Add py-sncosmo packageAdam J. Stewart6-22/+234
2016-06-16Add 'jdk' as a dependency.Glenn Johnson1-0/+1
Add jdk as a dependency so that R has support for java and allow packages that need java to work.
2016-06-16Add list_url for old versions.Glenn Johnson3-10/+12
2016-06-16Make install comment consistent with actual call.Glenn Johnson1-1/+1
2016-06-16Add validator for bioconductor packagesGlenn Johnson1-0/+13
This commit adds a validator function to make sure the versions of R and bioconductor are in sync.
2016-06-16Tweak how R packages are built.Glenn Johnson5-10/+14
Add bzip2 as a dependency to base R. Switch from installing the R packages from tar files to installing from the extracted directory. This is more in line with a standard install and also allows installing from VCS. Use the Bioconductor version for BiocGenerics and future Bioconductor packages. Suffix the package with 'bioc-$version' to indicate which Bioconductor release the package is a part of. This is actually more important than the actual version attached to individual packages although those are subject to change within the Bioconductor branch.
2016-06-16Fix flake8 errorsGlenn Johnson2-3/+4
Use Bioconductor provided Short URL for homepage in BiocGenerics. Wrap description text for utf variant in pcre.
2016-06-16Update version of BiocGenericsGlenn Johnson1-1/+1
The BioConductor repositories only keep the most recent version so this has to be bumped.
2016-06-16Use configure_args rather than optionsGlenn Johnson1-8/+8
Replaced 'options' with 'configure_args'. That seems like a better name and is consistent with the packaging guide.
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