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2018-12-14Add latest version of libsigcpp (#10103)Adam J. Stewart1-1/+7
2018-12-14Add latest version of bdw-gc (#10100)Adam J. Stewart1-2/+4
2018-12-14Add latest version of libatomic-ops (#10099)Adam J. Stewart1-2/+3
2018-12-14pbsuite: pythonpath should be prepended not set (#10113)Levi Baber1-1/+1
2018-12-14clp: add explicit datadir (#10109)Justin Stanley1-0/+5
2018-12-14Updates to Google Test: (#10079)Andrew Gaspar1-3/+4
- Add version 1.8.1 - Change to sha256 checksums
2018-12-14qt: fix openssl dependency for older versions (#10106)Michael Kuhn1-0/+1
2018-12-14Add latest version of libxslt (#10098)Adam J. Stewart1-8/+8
2018-12-14Add latest version of poppler (#10101)Adam J. Stewart1-1/+2
2018-12-14Add latest version of cairo (#10102)Adam J. Stewart1-1/+3
2018-12-14Updated the Travis environment to xenial (#10090)Massimiliano Culpo1-9/+2
* Updated the Travis environment to xenial. * Python 2.6 needs to remain on Trusty (can't be installed from Xenial)
2018-12-14Turn on verbose output for MPICH builds in Travis (#10105)Massimiliano Culpo1-1/+5
Lately many CI runs for PRs are failing due to the `mpich` build that times out on Travis (10 mins. without output). As the timeout seems to happen consistently during the build phase, increasing the verbosity of that test can help working around the issue.
2018-12-14Fix spack package inheritance for module variables (#10097)Greg Becker5-25/+63
* we weren't properly setting module variables for the root package in a DAG -- just for transitive dependencies.
2018-12-14Add latest version of meson (#10104)Adam J. Stewart1-2/+4
2018-12-14make dtcmp an autotools spackage (#10095)Elsa Gonsiorowski, PhD1-6/+3
* make dtcmp an autotools spackage * better code
2018-12-13Add new packages for ELSD and ELSDc (#10072)Adam J. Stewart2-0/+56
2018-12-13cmake: add version 3.13.2 (#10092)Matthias Diener1-0/+1
2018-12-13Feature/spm (#10053)Miles Perry1-0/+32
* extract spm12.ctf to get binaries and libraries * flake8 edits * flake8 edits * spm: updates * spm: previous version
2018-12-13trf: add version 4.07b and install fixes (#10093)Eric1-2/+8
* trf: add version 4.07 and install fixes * suggested fixes
2018-12-13superlu-dist: update v6.1.0 checksum (#10078)Satish Balay1-1/+1
2018-12-13Add CUDA_HOME variable to cuda module file. (#10088)Jon Rood1-0/+3
2018-12-12lammps: add new stable version (#10086)Christoph Junghans1-0/+3
2018-12-12boost: add 1.69.0 (#10083)Denis Davydov1-0/+3
signals (v1) was removed in 1.69.0
2018-12-11LEMON: Create new package (#10077)Eric1-0/+18
2018-12-11added sha256 for scr v1.2.0-2 (#10082)Elsa Gonsiorowski, PhD1-1/+3
2018-12-11gcc: fix sys_ustat.h patch for gcc 4.8 and 4.9 (#10081)Mark W. Krentel2-1/+36
The sys_ustat.h.patch to file sanitizer_platform_limits_posix.cc from PR #10046 does not apply cleanly to gcc 4.8 or 4.9 (or earlier). GCC up to 4.8.x either don't have libsanitizer or else don't include ustat.h in sanitizer_platform_limits_posix.cc. GCC 4.9.x includes ustat.h, but needs a slightly different patch. The patch applies to GCC 5.x up to 6.4, and 7.x up to 7.3 and also 8.1.0. The patch is already included in the tar files for gcc 6.5.0, 7.4.0 and 8.2.0.
2018-12-11flux-core & flux-sched: fix compilation and dependencies (#10049)Stephen Herbein2-3/+12
* flux-sched: fix compilation errors configure was being run twice becuase the staging symlinks were confusing autotools mirror flux-core in building in a subdirectory to avoid other common compilation problems, like the one in PR #3543 * flux-core: update dependencies munge is no longer a dependency provide hints for lua version so that `spack install flux-core` works "out-of-the-box". Currently, when no explicity version is provided, the concretizer attempts to use lua@5.3, which is invalid. Closes #10000
2018-12-10Update LBANN generator and bug fix (#9906)Brian Van Essen3-13/+28
* Added a package for the MDAnalysis toolkit. * Added Ninja as the generator for LBANN, Hydrogen, and Aluminum. Also fixed a bug in how the Conduit variant is included in LBANN. Added new versions for Hydrogen and LBANN. * Updated lbann package so that the CMAKE parameters are set when the variant is on and off.
2018-12-10Make downloads from list_url deterministic (#10047)Adam J. Stewart1-1/+1
2018-12-10mofem: add new releases and minor changes (#9138)Lukasz5-48/+79
2018-12-10cloc: URLs are now consistent (#10068)Matthias Diener1-3/+1
Fixed in upstream: https://github.com/AlDanial/cloc/issues/352
2018-12-09metis: Fix issues with gcc6 and misleading indentation (#10058)Tom Payerle2-0/+13
Added patch to GKlibSystem.cmake to disable warnings (which get promoted to errors) due to -Wmisleading-indentation being added to -Wall in gcc 6
2018-12-08gcc: add versions 7.4, 6.5 (#10061)Matthias Diener1-0/+6
2018-12-08OpenMPI: adding static libraries with slurm support for latest versions. ↵Jon Rood1-0/+4
(#10055)
2018-12-08TraceR: add release tag/version (#10054)Abhinav Bhatele1-0/+1
2018-12-08pumi: shared variant (#10057)Cameron Smith1-0/+2
2018-12-08eztrace: add new package (#10060)Matthias Diener1-0/+25
2018-12-07r-expint: new package at 0.1-5 (#10043)Justin Stanley1-0/+19
2018-12-07Fix Catch2 Single Header (#10022)Axel Huebl1-1/+4
Fix the install of the single header amalgate in catch2. The public API for catch < 2.3.0 was "#include <catch.hpp>". For 2.3.0+ it is "#include <catch2/catch.hpp>"
2018-12-07gcc: Add patch to build GCC with glibc 2.28 and later (#10046)James Clark2-0/+65
2018-12-07pbsuite: new package at 15.8.24 (#10059)Justin Stanley1-0/+28
2018-12-07scallop: new package at 0.10.3 (#10041)Justin Stanley1-0/+26
2018-12-07r-sseq: new package at 1.20.0 (#10042)Justin Stanley1-0/+20
2018-12-07r-blockmodeling: new package at 0.3.1 (#10044)Justin Stanley1-0/+22
2018-12-07Spades: Add version 3.13.0 (#10033)Mario Melara1-1/+2
* Spades: Add version 3.13.0 In version 3.13.0 the CmakeLists.txt dir is at a different location than in other versions. Versions up to 3.12.0 are located in "src" whereas 3.13.0 is a level deeper at "assemblers/src". * Remove git and add new version hash
2018-12-06clp: new package at 1.16.11 (#10040)Justin Stanley1-0/+16
2018-12-06cdo: fix URLs (#10025)Michael Kuhn1-8/+8
2018-12-06multimethod: slight refactoring, documentation for code reviewGregory Becker5-41/+65
2018-12-06fix MRO for multimethod.__call__ using iterative algorithm.Gregory Becker7-10/+137
Add tests MRO for inherited multimethods with multiple inheritance Add tests for inherited and overridden multimethods
2018-12-06tests: fully parametrize multimethod testTodd Gamblin1-37/+47
- all multimethod tests are now run for both `multimethod` and `multimethod-inheritor` - do this with a parameterized fixture (pkg_name) that runs the same tests on both