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2020-07-30zipkin: new package at v2.21.5 (#17780)darmac1-0/+28
2020-07-29New package: r-hh (#17667)Glenn Johnson1-0/+46
* New package: r-hh * Add short description Add the project one liner for a short description that will be used for `module whatis`.
2020-07-29Updated iq-tree package (#17690)ilbiondo1-3/+5
2020-07-29Intel packages: new versions (#17692)Robert Mijakovic8-0/+15
* update version: intel packages daal, ipp, mkl-dnn, mkl, mpi, parallel-studio, pin, tbb and makes url parameter consistent and always use single quote. * Fixes a typo with one of the sha256 checksum.. * Adds version entries for new versions of Intel packages. * Adds hashes for new versions of Intel packages. * Adds missing hash of Intel compiler. * Adds the newest version of Intel MPI 2019.8. * Fixes hash for intel-parallel-studio and intel-tbb. * Fixes version number of Intel MPI. Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2020-07-29CMake: Fix compilation with Intel compilers on some systems. (#17693)Rémi Lacroix2-0/+15
Systems with older GNU compilers were not affected. This commit fixes #15901 and fixes #17605.
2020-07-29pgi: update to 20.4 (#17696)Tiziano Müller1-0/+1
2020-07-29libmodbus: new package (#17778)Shayna Kapadia1-0/+26
* libmodbus:adding new package * fixing testing failures * fixing flake 8 errors * fixing flake 8 errors Co-authored-by: Kapadia <kapadia2@llnl.gov>
2020-07-29update version to 1.1.5 (#17701)Rao Garimella1-1/+2
Co-authored-by: Rao Garimella <rao@abyzou.lanl.gov>
2020-07-29use libquadmath only x86_4 and ppcle. (#17728)Toyohisa Kameyama1-0/+11
2020-07-29openfoam package updates, scotch version update (#17731)Mark Olesen2-7/+11
* openfoam: use MPI 'headers' property (fixes #17730) * openfoam: +spdp variant, usable for OpenFOAM 1906 and later in contrast to +float32, which uses single-precision throughout, +spdp uses the following: - single-precision for most internals - double-precision for linear solver * openfoam: add m4 as build dependency * scotch: update to 6.0.9 released Oct 2019 Co-authored-by: Mark Olesen <Mark.Olesen@esi-group.com>
2020-07-29CLAW: Add version 2.0.2 (#17733)Valentin Clement (バレンタイン クレメン)1-0/+1
2020-07-29New package: vgm (#17741)Wouter Deconinck1-0/+49
* [vgm] new package Virtual Geometry Model (VGM) * [vgm] Updated description
2020-07-29New package: geant4-vmc (#17745)Wouter Deconinck1-0/+34
* [geant4-vmc] New package * [geant4-vmc] aligned spacing
2020-07-29Add Caliper v2.4.0 (#17750)David Böhme1-11/+9
* Add Caliper v2.4.0 * Use built-in gotcha
2020-07-29Adding pic support for Kokkos (#17751)Julien Loiseau1-0/+5
* Adding pic support for Kokkos * Update pic for kokkos
2020-07-29elang add depends_on('ncurses', type='link') (#17761)h-denpo1-0/+1
2020-07-29libunwind: add +pic variant (#17762)Mark W. Krentel1-2/+8
Libunwind already builds a shared library. The +pic variant adds the compiler pic flag to the static archive so that it can be linked into another shared library.
2020-07-29eagle: fix CC=gcc and delete march=native (#17763)ketsubouchi1-0/+7
2020-07-29spades: add 3.14.1 (#17776)Justin S1-0/+1
2020-07-29Tweak to EOSPAC for gcc@10 Support (#17777)Robert Pavel1-6/+11
Eospac's build breaks on gcc@10: due to dependence on -fcommon behavior and gnu changing to -fno-common. Added conditional argument to support bleeding edge compilers
2020-07-29update URL and sha256 for aws-parallelcluster 2.8.0 (#17685)tilne1-1/+2
Signed-off-by: Tim Lane <tilne@amazon.com>
2020-07-29[bowtie2] added version 2.4.1 (#17748)Jen Herting1-0/+1
2020-07-29Boost: Update conflicts for version 1.73.0. (#17774)Rémi Lacroix1-1/+1
Variant "+mpi+python cxxstd=98" is fixed in 1.73.0.
2020-07-29express: add cast for %fj (#17764)ketsubouchi1-0/+1
2020-07-29clamcv: Add curl dependency. (#17765)Toyohisa Kameyama1-0/+1
2020-07-29Add new package: solr (#17597)darmac1-0/+28
* Add new package: solr * refine version order
2020-07-29zlib: style changes to check if set of changed files is computed correctlyMassimiliano Culpo1-3/+2
2020-07-29Use "fetch-depth: 0" to retrieve all history from remoteMassimiliano Culpo4-10/+19
2020-07-29Simplified YAML files for Github Actions workflowsMassimiliano Culpo4-18/+7
Updated actions where needed
2020-07-29Group tests with similar duration togetherMassimiliano Culpo4-76/+72
Style and documentation tests take just a few minutes to run. Since in Github actions one can't restart a single job but needs to restart an entire workflow, here we group tests with similar duration together.
2020-07-29qt: fix build with ~ssl. (#17767)Matthias Wolf1-1/+1
OpenSSL was pulled from the spec too early, leading to failures when attempting to build with ~ssl.
2020-07-29perl: add missing berkeley-db dependency (#17771)Andrew W Elble1-0/+1
2020-07-29lmod: change variant defaults to match Lmod's defaults (#17770)Massimiliano Culpo1-2/+2
2020-07-28Amrvis: update branch name (#17718)mic841-2/+2
2020-07-28Merge tag 'v0.15.3' into developTodd Gamblin4-5/+22
2020-07-28update CHANGELOG.md for 0.15.3v0.15.3Todd Gamblin1-0/+12
2020-07-28bump version number for 0.15.3Todd Gamblin3-5/+10
2020-07-27bugfix: allow relative view paths (#17721)Greg Becker1-14/+28
Relative paths in views have been broken since #17608 or earlier. - [x] Fix by passing base path of the environment into the `ViewDescriptor`. Relative paths are calculated from this path.
2020-07-27bugfix: allow relative view paths (#17721)Greg Becker1-14/+28
Relative paths in views have been broken since #17608 or earlier. - [x] Fix by passing base path of the environment into the `ViewDescriptor`. Relative paths are calculated from this path.
2020-07-27tutorial: Add boto3 installation to setup script (#17722)Todd Gamblin1-0/+6
2020-07-27tutorial: Add boto3 installation to setup scriptTodd Gamblin1-0/+6
2020-07-27Update darshan package with mpi variant (#17717)Patrick Gartung1-6/+11
* Update darshan package with nompi variant. * Change variant to mpi and default to True
2020-07-27r-adespatial: added new package (#17700)Glenn Johnson6-0/+172
This PR adds the r-adesaptial package and several other new packages as dependencies. - r-adegraphics - r-adephylo - r-phylobase - r-rncl - r-rnexml
2020-07-27r-dss: added new package at v2.36.0 with dependencies (#17661)Glenn Johnson6-1/+93
This PR adds the r-dss package and the r-bsseq package, also new, as a dependency. This includes the latest versions, which required updates to the following dependencies: - r-biocgenerics - r-iranges - r-s4vectors - r-summarizedexperiment Older versions of r-dss and r-bsseq are included as well to ensure compatibility with older versions of the above dependencies.
2020-07-27Relocation of sbang needs to be done when the spack prefix changes even if ↵Patrick Gartung2-4/+17
the install tree has not changed. (#17455)
2020-07-27Relocate rpaths for all binaries, then do text bin replacement if the rpaths ↵Patrick Gartung1-7/+10
still exist after running patchelf/otool (#17418)
2020-07-27qt: fixed build with apple-clang (#17706)Seth R. Johnson1-0/+1
2020-07-27SciPy: added v1.5.2 (#17708)Adam J. Stewart1-1/+2
2020-07-27scons: added support to Fujitsu compilers (#17710)ketsubouchi2-8/+180
2020-07-27acts: added v0.29 (#17712)Hadrien G1-0/+1
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